NP-MRD: Showing NP-Card for [(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate (NP0188558)

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Record Information

Version

2.0

Created at

2022-09-04 04:54:54 UTC

Updated at

2022-09-04 04:54:54 UTC

NP-MRD ID

NP0188558

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate

Description

Hamamelitannin belongs to the class of organic compounds known as galloyl esters. These are organic compounds that contain an ester derivative of 3,4,5-trihydroxybenzoic acid. [(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate is found in Castanea crenata, Cercidiphyllum japonicum, Hamamelis virginiana and Liquidambar formosana. [(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate was first documented in 2022 (PMID: 36012541). Based on a literature review a small amount of articles have been published on Hamamelitannin (PMID: 35974994) (PMID: 35933706) (PMID: 35740016) (PMID: 35690957).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042206542D          

 34 36  0  0  1  0            999 V2000
    4.6184   -5.8085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7980   -5.8947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3130   -5.2273    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6486   -4.4736    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1637   -3.8062    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3387   -3.8062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0837   -3.0215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2991   -2.7666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1991   -1.9235    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3032   -1.9235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0483   -1.1389    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2413   -0.9674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6893   -1.5805    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9864   -0.1827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1794   -0.0112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9245    0.7734    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1175    0.9449    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4765    1.3865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2215    2.1711    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2835    1.2150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8355    1.8281    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5384    0.4304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4186   -3.0215    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2032   -2.7666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4624   -6.6484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9473   -7.3158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6118   -8.0695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0967   -8.7369    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7913   -8.1557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4557   -8.9094    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3064   -7.4883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4859   -7.5745    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6419   -6.7346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
 15 23  1  0  0  0  0
  9 24  1  0  0  0  0
  5 24  1  0  0  0  0
 24 25  1  1  0  0  0
  2 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  2  0  0  0  0
 26 34  1  0  0  0  0
M  END

     RDKit          3D

 54 56  0  0  0  0  0  0  0  0999 V2000
    3.6557   -1.8871   -1.1240 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0478   -0.7144   -1.0026 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3004    0.3057   -1.5602 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1049    0.1153   -2.2689 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0409   -0.5452   -1.4220 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1223   -0.7221   -2.1363 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0989    0.0906   -1.6257 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8895    1.3879   -2.0309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8034   -0.0023   -0.1157 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0239   -1.2996    0.2384 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5200    1.0346    0.6513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9006    0.9026    0.5430 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6847   -0.1410    0.9702 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1926   -1.1200    1.5342 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1261   -0.0866    0.7510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7207    0.9896    0.1238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0750    1.0815   -0.1029 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6524    2.1858   -0.7421 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8880    0.0444    0.3172 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2601    0.1653    0.0733 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3303   -1.0321    0.9396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1530   -2.0730    1.3604 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9701   -1.1046    1.1573 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7102    0.2811   -0.1976 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3683   -0.1252    0.9338 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2797   -0.4210   -0.2814 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7393    0.8845   -0.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9011    1.1624    0.5478 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3334    2.4703    0.6802 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6622    0.1658    1.1115 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8484    0.4564    1.8052 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2170   -1.1341    0.9706 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9834   -2.1432    1.5388 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0514   -1.4118    0.2882 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2384   -0.3775   -3.2380 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7116    1.1434   -2.5015 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3509   -1.5438   -1.0505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1051   -0.2929   -1.8446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7230    1.9073   -2.1726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9185   -1.9206   -0.5410 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2671    0.8670    1.7376 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1553    2.0469    0.3877 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0833    1.7978   -0.2031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0325    2.9181   -1.0327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8589   -0.5905    0.3787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7543   -2.8818    1.8253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5426   -1.9627    1.6511 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8463    1.3467   -0.4477 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7650    0.6892    1.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1307    1.6776   -0.5826 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8357    3.2626    0.2975 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3644   -0.3088    2.1963 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6661   -3.0983    1.4411 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6992   -2.4405    0.1766 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  0
  2 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  1  0
 28 30  2  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32 34  2  0
  5 24  1  0
 24 25  1  0
 24  9  1  0
  9 10  1  1
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 21 23  2  0
  9  7  1  0
 23 15  1  0
 34 26  1  0
  8 39  1  0
  7 38  1  1
  5 37  1  1
  4 35  1  0
  4 36  1  0
 27 50  1  0
 29 51  1  0
 31 52  1  0
 33 53  1  0
 34 54  1  0
 24 48  1  6
 25 49  1  0
 10 40  1  0
 11 41  1  0
 11 42  1  0
 16 43  1  0
 18 44  1  0
 20 45  1  0
 22 46  1  0
 23 47  1  0
M  END


  Mrv1652309042206542D          

 34 36  0  0  1  0            999 V2000
    4.6184   -5.8085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7980   -5.8947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3130   -5.2273    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6486   -4.4736    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1637   -3.8062    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3387   -3.8062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0837   -3.0215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2991   -2.7666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1991   -1.9235    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3032   -1.9235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0483   -1.1389    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2413   -0.9674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6893   -1.5805    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9864   -0.1827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1794   -0.0112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9245    0.7734    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1175    0.9449    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4765    1.3865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2215    2.1711    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2835    1.2150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8355    1.8281    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5384    0.4304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4186   -3.0215    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2032   -2.7666    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4624   -6.6484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9473   -7.3158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6118   -8.0695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0967   -8.7369    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7913   -8.1557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4557   -8.9094    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3064   -7.4883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4859   -7.5745    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6419   -6.7346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  2  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
 15 23  1  0  0  0  0
  9 24  1  0  0  0  0
  5 24  1  0  0  0  0
 24 25  1  1  0  0  0
  2 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  2  0  0  0  0
 26 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0188558

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1O[C@@H](COC(=O)C2=CC(O)=C(O)C(O)=C2)[C@H](O)[C@@]1(O)COC(=O)C1=CC(O)=C(O)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C20H20O14/c21-9-1-7(2-10(22)14(9)25)17(28)32-5-13-16(27)20(31,19(30)34-13)6-33-18(29)8-3-11(23)15(26)12(24)4-8/h1-4,13,16,19,21-27,30-31H,5-6H2/t13-,16-,19?,20-/m0/s1

> <INCHI_KEY>
FEPAFOYQTIEEIS-WZKFEGCESA-N

> <FORMULA>
C20H20O14

> <MOLECULAR_WEIGHT>
484.366

> <EXACT_MASS>
484.085305324

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
43.718801913459465

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(3S,4S,5S)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate

> <JCHEM_LOGP>
0.10067019300000002

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.407128548925622

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.806346578154002

> <JCHEM_PKA_STRONGEST_BASIC>
-4.404458430808673

> <JCHEM_POLAR_SURFACE_AREA>
243.89999999999998

> <JCHEM_REFRACTIVITY>
107.67219999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
[(3S,4S,5S)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate

> <JCHEM_VEBER_RULE>
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HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  O   UNK     0       8.621 -10.842   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       7.090 -11.003   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       6.184  -9.758   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       6.811  -8.351   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.906  -7.105   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       4.366  -7.105   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       3.890  -5.640   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.425  -5.164   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       5.136  -4.735   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       4.105  -3.591   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       6.166  -3.591   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.690  -2.126   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       4.184  -1.806   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.153  -2.950   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       3.708  -0.341   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.202  -0.021   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.726   1.444   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       0.219   1.764   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.756   2.588   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.280   4.053   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.262   2.268   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       5.293   3.412   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       4.738   0.803   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.381  -5.640   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       7.846  -5.164   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       6.463 -12.410   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.368 -13.656   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.742 -15.063   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       7.647 -16.309   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       5.210 -15.224   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.584 -16.631   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       4.305 -13.978   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       2.774 -14.139   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       4.932 -12.571   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   26                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   24                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11   24                                             
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   23                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   15                                                       
CONECT   24    9    5   25                                                  
CONECT   25   24                                                            
CONECT   26    2   27   34                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   26                                                       
MASTER        0    0    0    0    0    0    0    0   34    0   72    0
END

View in JSmol

Synonyms

Value	Source
2',5-Di-O-galloyl hamamelose	MeSH
Digalloylhamamelose	MeSH

Chemical Formula

C₂₀H₂₀O₁₄

Average Mass

484.3660 Da

Monoisotopic Mass

484.08531 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

OC1O[C@@H](COC(=O)C2=CC(O)=C(O)C(O)=C2)[C@H](O)[C@@]1(O)COC(=O)C1=CC(O)=C(O)C(O)=C1

InChI Identifier

InChI=1S/C20H20O14/c21-9-1-7(2-10(22)14(9)25)17(28)32-5-13-16(27)20(31,19(30)34-13)6-33-18(29)8-3-11(23)15(26)12(24)4-8/h1-4,13,16,19,21-27,30-31H,5-6H2/t13-,16-,19?,20-/m0/s1

InChI Key

FEPAFOYQTIEEIS-WZKFEGCESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Castanea crenata	LOTUS Database	35616633
Cercidiphyllum japonicum	LOTUS Database	35616633
Hamamelis virginiana	LOTUS Database	35616633
Liquidambar formosana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as galloyl esters. These are organic compounds that contain an ester derivative of 3,4,5-trihydroxybenzoic acid.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzoic acids and derivatives

Direct Parent

Galloyl esters

Alternative Parents

Substituents

Galloyl ester
P-hydroxybenzoic acid alkyl ester
M-hydroxybenzoic acid ester
P-hydroxybenzoic acid ester
Benzoate ester
Pentose monosaccharide
Benzenetriol
Pyrogallol derivative
Benzoyl
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monosaccharide
Oxolane
Tertiary alcohol
Hemiacetal
Secondary alcohol
Carboxylic acid ester
1,2-diol
Oxacycle
Carboxylic acid derivative
Organoheterocyclic compound
Polyol
Organic oxygen compound
Hydrocarbon derivative
Alcohol
Organic oxide
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

21468878

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Tannin

METLIN ID

Not Available

PubChem Compound

44584241

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Piazza S, Martinelli G, Magnavacca A, Fumagalli M, Pozzoli C, Terno M, Canilli L, Angarano M, Maranta N, Dell'Agli M, Sangiovanni E: Unveiling the Ability of Witch Hazel (Hamamelis virginiana L.) Bark Extract to Impair Keratinocyte Inflammatory Cascade Typical of Atopic Eczema. Int J Mol Sci. 2022 Aug 17;23(16):9279. doi: 10.3390/ijms23169279. [PubMed:36012541 ]
Simonetti O, Marasca S, Candelora M, Rizzetto G, Radi G, Molinelli E, Brescini L, Cirioni O, Offidani A: Methicillin-resistant Staphylococcus aureus as a cause of chronic wound infections: Alternative strategies for management. AIMS Microbiol. 2022 Apr 24;8(2):125-137. doi: 10.3934/microbiol.2022011. eCollection 2022. [PubMed:35974994 ]
Zhang M, Xue J, Chen X, Elsaid FG, Salem ET, Ghanem RA, El-Kott AF, Xu Z: Bioactivity of hamamelitannin, flavokawain A, and triacetyl resveratrol as natural compounds: Molecular docking study, anticolon cancer, and anti-Alzheimer potentials. Biotechnol Appl Biochem. 2023 Apr;70(2):730-745. doi: 10.1002/bab.2394. Epub 2022 Aug 17. [PubMed:35933706 ]
Piazza S, Martinelli G, Vrhovsek U, Masuero D, Fumagalli M, Magnavacca A, Pozzoli C, Canilli L, Terno M, Angarano M, Dell'Agli M, Sangiovanni E: Anti-Inflammatory and Anti-Acne Effects of Hamamelis virginiana Bark in Human Keratinocytes. Antioxidants (Basel). 2022 Jun 5;11(6):1119. doi: 10.3390/antiox11061119. [PubMed:35740016 ]
Samdani MN, Morshed N, Reza R, Asaduzzaman M, Islam ABMMK: Targeting SARS-CoV-2 non-structural protein 13 via helicase-inhibitor-repurposing and non-structural protein 16 through pharmacophore-based screening. Mol Divers. 2023 Jun;27(3):1067-1085. doi: 10.1007/s11030-022-10468-8. Epub 2022 Jun 12. [PubMed:35690957 ]
LOTUS database [Link]

Showing NP-Card for [(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate (NP0188558)

MOL for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

3D MOL for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

3D SDF for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

3D-SDF for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

PDB for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

3D PDB for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

SMILES for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

INCHI for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

Structure for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)

3D Structure for NP0188558 ([(3s,4s,5s)-2,3,4-trihydroxy-5-[(3,4,5-trihydroxybenzoyloxy)methyl]oxolan-3-yl]methyl 3,4,5-trihydroxybenzoate)