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Showing NP-Card for (2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid (NP0187959)

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Record Information
Version2.0
Created at2022-09-04 04:12:44 UTC
Updated at2022-09-04 04:12:44 UTC
NP-MRD IDNP0187959
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid
Description (2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid is found in Macrophoma commelinae.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)


  Mrv1652309042206122D          

 16 16  0  0  0  0            999 V2000
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  3 15  2  0  0  0  0
 15 16  1  0  0  0  0
M  END
Download

3D MOL for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)

     RDKit          3D

 28 28  0  0  0  0  0  0  0  0999 V2000
    3.3539   -0.6193    0.5145 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5198   -0.5993   -0.6256 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2432   -0.0890   -0.4759 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1650   -0.8701   -0.1279 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4249   -2.3089    0.0849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1237   -0.3178    0.0165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1406   -1.2506    0.3807 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3805   -0.9342    0.5578 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9190    0.3700    0.4205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2030    0.4981    0.6405 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3654    1.5656    0.0959 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1739    0.9490   -0.2055 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2033    1.7479   -0.5363 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4342    2.9711   -0.7159 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0716    1.2537   -0.6887 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1860    2.1384   -1.0625 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9038   -1.2626    1.3158 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3867   -0.9395    0.2768 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3950    0.4021    0.9331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2753   -2.9408   -0.5203 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1754   -2.5392    1.1500 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4356   -2.6098   -0.2028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9084   -2.3369    0.5365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0958   -1.7552    0.8442 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3425    2.2949    0.8189 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7789    2.8851   -1.7893 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0469    1.5958   -1.4934 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4790    2.7016   -0.1427 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 15  2  0
 15 16  1  0
 15 13  1  0
 13 14  2  0
 13 12  1  0
 12  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 11  1  0
  9 10  2  0
  6  4  2  0
  4  5  1  0
  4  3  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
 16 26  1  0
 16 27  1  0
 16 28  1  0
  7 23  1  0
  8 24  1  0
 11 25  1  0
  5 20  1  0
  5 21  1  0
  5 22  1  0
M  END
Download

3D SDF for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)


  Mrv1652309042206122D          

 16 16  0  0  0  0            999 V2000
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
  6 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
  3 15  2  0  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0187959

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(C)C(=O)OC(\C=C/C(O)=O)=C1C

> <INCHI_IDENTIFIER>
InChI=1S/C11H12O5/c1-6-8(4-5-9(12)13)16-11(14)7(2)10(6)15-3/h4-5H,1-3H3,(H,12,13)/b5-4-

> <INCHI_KEY>
FHQHSPYLIZRPEF-PLNGDYQASA-N

> <FORMULA>
C11H12O5

> <MOLECULAR_WEIGHT>
224.212

> <EXACT_MASS>
224.068473486

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
21.944282230118137

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2Z)-3-(4-methoxy-3,5-dimethyl-2-oxo-2H-pyran-6-yl)prop-2-enoic acid

> <JCHEM_LOGP>
1.1014010446666662

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.32419064993757

> <JCHEM_PKA_STRONGEST_BASIC>
-4.842363895569019

> <JCHEM_POLAR_SURFACE_AREA>
72.83000000000001

> <JCHEM_REFRACTIVITY>
58.9269

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2Z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)

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PDB for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)
HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   15                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    6   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13    3   16                                                  
CONECT   16   15                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

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3D PDB for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)
Download
SMILES for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)
COC1=C(C)C(=O)OC(\C=C/C(O)=O)=C1C
Download
INCHI for NP0187959 ((2z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid)
InChI=1S/C11H12O5/c1-6-8(4-5-9(12)13)16-11(14)7(2)10(6)15-3/h4-5H,1-3H3,(H,12,13)/b5-4-
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View in JSmol
SynonymsNot Available
Chemical FormulaC11H12O5
Average Mass224.2120 Da
Monoisotopic Mass224.06847 Da
IUPAC Name(2Z)-3-(4-methoxy-3,5-dimethyl-2-oxo-2H-pyran-6-yl)prop-2-enoic acid
Traditional Name(2Z)-3-(4-methoxy-3,5-dimethyl-6-oxopyran-2-yl)prop-2-enoic acid
CAS Registry NumberNot Available
SMILES
COC1=C(C)C(=O)OC(\C=C/C(O)=O)=C1C
InChI Identifier
InChI=1S/C11H12O5/c1-6-8(4-5-9(12)13)16-11(14)7(2)10(6)15-3/h4-5H,1-3H3,(H,12,13)/b5-4-
InChI KeyFHQHSPYLIZRPEF-PLNGDYQASA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Macrophoma commelinaeLOTUS Database
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.1ChemAxon
pKa (Strongest Acidic)4.32ChemAxon
pKa (Strongest Basic)-4.8ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area72.83 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity58.93 m³·mol⁻¹ChemAxon
Polarizability21.94 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
External LinksNot Available
References
General References
  1. LOTUS database [Link]