NP-MRD: Showing NP-Card for (3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate (NP0187605)

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Record Information

Version

2.0

Created at

2022-09-04 03:48:09 UTC

Updated at

2022-09-04 03:48:09 UTC

NP-MRD ID

NP0187605

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate

Description

4-[(3R,4S)-3-hydroxy-3,7-dimethylocta- 1,6-dienyl(9Z, 12Z)- 9,12-octadecadienoate belongs to the class of organic compounds known as lineolic acids and derivatives. These are derivatives of lineolic acid. Lineolic acid is a polyunsaturated omega-6 18 carbon long fatty acid, with two CC double bonds at the 9- and 12-positions. (3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate is found in Phallus indusiatus. Based on a literature review very few articles have been published on 4-[(3R,4S)-3-hydroxy-3,7-dimethylocta- 1,6-dienyl(9Z, 12Z)- 9,12-octadecadienoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042205482D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309042205482D          

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M  END
> <DATABASE_ID>
NP0187605

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC\C=C/C\C=C/CCCCCCCC(=O)O[C@@H](CC=C(C)C)[C@](C)(O)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C28H48O3/c1-6-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-27(29)31-26(24-23-25(3)4)28(5,30)7-2/h7,11-12,14-15,23,26,30H,2,6,8-10,13,16-22,24H2,1,3-5H3/b12-11-,15-14-/t26-,28+/m0/s1

> <INCHI_KEY>
FFIODWHMPHVNMQ-RCJNOGFCSA-N

> <FORMULA>
C28H48O3

> <MOLECULAR_WEIGHT>
432.689

> <EXACT_MASS>
432.360345406

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
79

> <JCHEM_AVERAGE_POLARIZABILITY>
54.652694743981876

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,4S)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9Z,12Z)-octadeca-9,12-dienoate

> <JCHEM_LOGP>
8.658936764666668

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.665055536064997

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3827047085251687

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
136.59470000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
20

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(3R,4S)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9Z,12Z)-octadeca-9,12-dienoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.219   0.557   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.210   1.721   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.714   3.176   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.741   3.680   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.170   2.672   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.219   4.631   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.731   4.922   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.739   3.758   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.251   4.049   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -6.259   2.885   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.755   5.504   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.210   5.795   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       1.302   5.504   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.806   4.049   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.310   6.668   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.822   6.377   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.830   7.541   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.343   7.250   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.351   8.415   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.863   8.124   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.367   6.668   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.359   5.504   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.863   4.049   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.375   3.758   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.879   2.303   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      12.392   2.012   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.400   3.176   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      14.912   2.885   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      15.920   4.049   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      17.432   3.758   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      18.441   4.922   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    6   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   60    0
END

View in JSmol

Synonyms

Value	Source
4-[(3R,4S)-3-Hydroxy-3,7-dimethylocta- 1,6-dienyl(9Z, 12Z)- 9,12-octadecadienoic acid	Generator

Chemical Formula

C₂₈H₄₈O₃

Average Mass

432.6890 Da

Monoisotopic Mass

432.36035 Da

IUPAC Name

(3R,4S)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9Z,12Z)-octadeca-9,12-dienoate

Traditional Name

(3R,4S)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9Z,12Z)-octadeca-9,12-dienoate

CAS Registry Number

Not Available

SMILES

CCCCC\C=C/C\C=C/CCCCCCCC(=O)O[C@@H](CC=C(C)C)[C@](C)(O)C=C

InChI Identifier

InChI=1S/C28H48O3/c1-6-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-27(29)31-26(24-23-25(3)4)28(5,30)7-2/h7,11-12,14-15,23,26,30H,2,6,8-10,13,16-22,24H2,1,3-5H3/b12-11-,15-14-/t26-,28+/m0/s1

InChI Key

FFIODWHMPHVNMQ-RCJNOGFCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Phallus indusiatus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as lineolic acids and derivatives. These are derivatives of lineolic acid. Lineolic acid is a polyunsaturated omega-6 18 carbon long fatty acid, with two CC double bonds at the 9- and 12-positions.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Lineolic acids and derivatives

Direct Parent

Lineolic acids and derivatives

Alternative Parents

Substituents

Octadecanoid
Monoterpenoid
Acyclic monoterpenoid
Fatty acid ester
Tertiary alcohol
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.66	ChemAxon
pKa (Strongest Acidic)	13.67	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	20	ChemAxon
Refractivity	136.59 m³·mol⁻¹	ChemAxon
Polarizability	54.65 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78437346

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15895323

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate (NP0187605)

MOL for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

3D MOL for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

3D SDF for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

3D-SDF for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

PDB for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

3D PDB for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

SMILES for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

INCHI for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

Structure for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)

3D Structure for NP0187605 ((3r,4s)-3-hydroxy-3,7-dimethylocta-1,6-dien-4-yl (9z,12z)-octadeca-9,12-dienoate)