NP-MRD: Showing NP-Card for 8-[(2r)-5-oxooxolan-2-yl]octanoic acid (NP0187250)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-04 03:21:23 UTC

Updated at

2022-09-04 03:21:23 UTC

NP-MRD ID

NP0187250

Secondary Accession Numbers

None

Natural Product Identification

Common Name

8-[(2r)-5-oxooxolan-2-yl]octanoic acid

Description

8-[(2R)-5-oxooxolan-2-yl]octanoic acid belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. 8-[(2r)-5-oxooxolan-2-yl]octanoic acid is found in Phaseolus vulgaris. It was first documented in 2022 (PMID: 36057864). Based on a literature review a significant number of articles have been published on 8-[(2R)-5-oxooxolan-2-yl]octanoic acid (PMID: 36057863) (PMID: 36057862) (PMID: 36057861) (PMID: 36057860) (PMID: 36057856) (PMID: 36057859).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
    5.0654    1.7301   -1.4252 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1716    1.1404   -0.3142 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3542    1.1880    0.4230 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9861    0.3682    0.2173 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5644   -0.6929   -0.7594 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4000   -1.4579   -0.2365 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2169   -0.5602   -0.0199 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0754   -1.4225    0.5050 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1495   -0.6005    0.7383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6814    0.0814   -0.5045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9255    0.8438   -0.0938 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9588   -0.1065    0.4719 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2099    0.7575    0.3093 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9749    1.2984   -1.0431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8466    1.6477   -1.8554 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6122    1.3459   -1.2427 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8293    2.0280    0.6996 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1450    1.1015    0.3222 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2011   -0.0214    1.2238 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4187   -1.3833   -0.9662 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2805   -0.1841   -1.7056 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6395   -1.9239    0.7491 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0914   -2.2497   -0.9633 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9141   -0.0583   -0.9506 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4215    0.2026    0.7859 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3805   -1.8608    1.4556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1556   -2.2134   -0.2738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8694    0.1992    1.4781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9466   -1.1889    1.2188 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9482    0.7102   -1.0079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0274   -0.7329   -1.1776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7328    1.6240    0.6623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7824   -0.3456    1.5407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0788   -0.9620   -0.1824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1338    0.1668    0.4009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1219    1.5311    1.1131 H   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0
  2  1  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 11  1  0
  3 17  1  0
  4 18  1  0
  4 19  1  0
  5 20  1  0
  5 21  1  0
  6 22  1  0
  6 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 10 30  1  0
 10 31  1  0
 11 32  1  1
 12 33  1  0
 12 34  1  0
 13 35  1  0
 13 36  1  0
M  END


  Mrv1652309042205212D          

 16 16  0  0  1  0            999 V2000
   -1.2807   -5.2327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5662   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5662   -3.9952    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1483   -5.2327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8628   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5772   -5.2327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2917   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0062   -5.2327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7206   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4351   -5.2327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1496   -4.8202    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2358   -3.9997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0428   -3.8282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4553   -4.5427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2758   -4.6289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9033   -5.1558    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 11 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0187250

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(=O)CCCCCCC[C@@H]1CCC(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C12H20O4/c13-11(14)7-5-3-1-2-4-6-10-8-9-12(15)16-10/h10H,1-9H2,(H,13,14)/t10-/m1/s1

> <INCHI_KEY>
SAHSZEZNXHBRJR-SNVBAGLBSA-N

> <FORMULA>
C12H20O4

> <MOLECULAR_WEIGHT>
228.288

> <EXACT_MASS>
228.136159124

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
25.62256952708588

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
8-[(2R)-5-oxooxolan-2-yl]octanoic acid

> <JCHEM_LOGP>
2.4358189503333336

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.615325351166278

> <JCHEM_PKA_STRONGEST_BASIC>
-7.042552424469839

> <JCHEM_POLAR_SURFACE_AREA>
63.599999999999994

> <JCHEM_REFRACTIVITY>
58.52230000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
8-[(2R)-5-oxooxolan-2-yl]octanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  O   UNK     0      -2.391  -9.768   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.057  -8.998   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -1.057  -7.458   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       0.277  -9.768   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.610  -8.998   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.944  -9.768   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.278  -8.998   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.612  -9.768   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.945  -8.998   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.279  -9.768   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.613  -8.998   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.774  -7.466   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.280  -7.146   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.050  -8.480   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      13.581  -8.641   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      11.019  -9.624   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   11                                                       
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Value	Source
8-[(2R)-5-Oxooxolan-2-yl]octanoate	Generator

Chemical Formula

C₁₂H₂₀O₄

Average Mass

228.2880 Da

Monoisotopic Mass

228.13616 Da

IUPAC Name

8-[(2R)-5-oxooxolan-2-yl]octanoic acid

Traditional Name

8-[(2R)-5-oxooxolan-2-yl]octanoic acid

CAS Registry Number

Not Available

SMILES

OC(=O)CCCCCCC[C@@H]1CCC(=O)O1

InChI Identifier

InChI=1S/C12H20O4/c13-11(14)7-5-3-1-2-4-6-10-8-9-12(15)16-10/h10H,1-9H2,(H,13,14)/t10-/m1/s1

InChI Key

SAHSZEZNXHBRJR-SNVBAGLBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Phaseolus vulgaris	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Medium-chain fatty acids

Alternative Parents

Substituents

Medium-chain fatty acid
Heterocyclic fatty acid
Dicarboxylic acid or derivatives
Gamma butyrolactone
Tetrahydrofuran
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Organoheterocyclic compound
Organic oxide
Carbonyl group
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.44	ChemAxon
pKa (Strongest Acidic)	4.62	ChemAxon
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	63.6 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	58.52 m³·mol⁻¹	ChemAxon
Polarizability	25.62 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163066254

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Poon AWC, Hofstaetter L, Judd-Lam S: Social connectedness of carers: An Australian national survey of carers. Health Soc Care Community. 2022 Sep 4. doi: 10.1111/hsc.13987. [PubMed:36057864 ]
Johnson-Laghi KA, Woo SM, Zafar Z, Fernandez S, Desale S, Robertazzi SE, Smith CI, Thomas AM, Lalos AT, Georgia SJ, Jenkins ML, Faust TW, Fishbein TM, Satoskar RS, Rangnekar AS, Hsu CC: Alcohol-associated liver disease predicts increased post-liver transplant opioid use. Clin Transplant. 2022 Sep 4:e14811. doi: 10.1111/ctr.14811. [PubMed:36057863 ]
Michael GC, Grema BA, Ashimi AO, Olawumi AL, Umar ZA, Mahmoud Z, Aji SA: Predictors of Satisfaction with Wound Care Services in an Outpatient Setting in Kano, Nigeria. West Afr J Med. 2022 Aug 31;39(8):800-807. [PubMed:36057862 ]
Jouglar E, Laprie A, Isfan F, Dumont B, Thebaud E, Escande A, Supiot S: Locoregional failure after postoperative flank irradiation for nephroblastoma: Results from the French cohort of the SIOP-2001 trial. Pediatr Blood Cancer. 2022 Sep 4:e29950. doi: 10.1002/pbc.29950. [PubMed:36057861 ]
Ruiu L, Marche MG, Mura ME, Tarasco E: Involvement of a novel Pseudomonas protegens strain associated with entomopathogenic nematode infective juveniles in insect pathogenesis. Pest Manag Sci. 2022 Sep 4. doi: 10.1002/ps.7166. [PubMed:36057860 ]
Demirel M, Diken Turksayar AA, Donmez MB: Translucency, color stability, and biaxial flexural strength of advanced lithium disilicate ceramic after coffee thermocycling. J Esthet Restor Dent. 2022 Sep 4. doi: 10.1111/jerd.12960. [PubMed:36057856 ]
Ren L, Li W, Li Q, Zhang D, Fang W, Yan D, Li Y, Wang Q, Jin X, Cao A: Metolachlor metal-organic framework nanoparticles for reducing leaching, ecotoxicity and improving bioactivity. Pest Manag Sci. 2022 Dec;78(12):5366-5378. doi: 10.1002/ps.7159. Epub 2022 Sep 26. [PubMed:36057859 ]
Nganwuchi CC, Onuegbu AJ, Olisekodiaka MJ, Okwara JE, Amah UK, Okamgba OC, Offiah SA: Comparative Evaluation of Creatinine and Cystatin C Derived Glomerular Filtration Rate Methods in Hiv Patients on Therapy and Healthy Controls. West Afr J Med. 2022 Aug 31;39(8):795-799. [PubMed:36057858 ]
Ezeala-Adikaibe BA, Okafor UH, Okwara CC, Iwuozo E, Ekochin F, Mbadiwe N, Chime P, Okpara T, Nnaji T, Nwobodo M, Ezeme M: Audit of Stroke Admissions in a Tertiary Hospital in South East Nigeria. West Afr J Med. 2022 Aug 31;39(8):788-794. [PubMed:36057857 ]
Authors unspecified: [Not Available]. Rofo. 2022 Jan;194(1):93. doi: 10.1055/a-1544-2324. Epub 2021 Dec 15. [PubMed:36057855 ]
LOTUS database [Link]

Showing NP-Card for 8-[(2r)-5-oxooxolan-2-yl]octanoic acid (NP0187250)

MOL for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

3D MOL for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

3D SDF for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

3D-SDF for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

PDB for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

3D PDB for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

SMILES for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

INCHI for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

Structure for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)

3D Structure for NP0187250 (8-[(2r)-5-oxooxolan-2-yl]octanoic acid)