NP-MRD: Showing NP-Card for methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate (NP0187165)

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Record Information

Version

2.0

Created at

2022-09-04 03:14:26 UTC

Updated at

2022-09-04 03:14:27 UTC

NP-MRD ID

NP0187165

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate

Description

Methyl (2R)-2-[(3R,6S)-6-[(2R,3aR,4aS,8aR,9aR)-4,4,7,9a-tetramethyl-2H,3H,3aH,4H,4aH,5H,6H,8aH,9H,9aH-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate belongs to the class of organic compounds known as naphthofurans. Naphthofurans are compounds containing a furan ring fused to a naphthalene moiety. Furan is a 5 membered- ring aromatic ring with four carbon and one oxygen atoms. Naphthalene is a polycyclic aromatic hydrocarbon made up of two fused benzene rings. methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate is found in Latrunculia brevis. Based on a literature review very few articles have been published on methyl (2R)-2-[(3R,6S)-6-[(2R,3aR,4aS,8aR,9aR)-4,4,7,9a-tetramethyl-2H,3H,3aH,4H,4aH,5H,6H,8aH,9H,9aH-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042205142D          

 30 33  0  0  1  0            999 V2000
   -1.6982   -5.6816    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -4.8691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2094   -4.3388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4342   -4.6210    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3527   -3.5263    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1279   -3.2442    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7207   -2.9960    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8640   -2.1836    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2320   -1.6533    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5433   -1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6865   -1.1230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3683   -1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8532   -1.2680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    5.4957   -2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2102   -2.7604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  5  6  1  6  0  0  0
  7  5  1  1  0  0  0
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 12 28  1  1  0  0  0
 10 29  1  0  0  0  0
 29 30  1  0  0  0  0
  7 30  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309042205142D          

 30 33  0  0  1  0            999 V2000
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  7 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0187165

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)[C@H](C)[C@H]1CC[C@](C)(OO1)[C@H]1C[C@H]2[C@@](C)(C[C@@H]3C=C(C)CC[C@@H]3C2(C)C)O1

> <INCHI_IDENTIFIER>
InChI=1S/C25H40O5/c1-15-8-9-18-17(12-15)14-25(6)20(23(18,3)4)13-21(28-25)24(5)11-10-19(29-30-24)16(2)22(26)27-7/h12,16-21H,8-11,13-14H2,1-7H3/t16-,17+,18+,19-,20-,21-,24+,25-/m1/s1

> <INCHI_KEY>
PNOATZDSQDNWLZ-NJXQHIOYSA-N

> <FORMULA>
C25H40O5

> <MOLECULAR_WEIGHT>
420.59

> <EXACT_MASS>
420.287574388

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
48.704025744078855

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (2R)-2-[(3R,6S)-6-[(2R,3aR,4aS,8aR,9aR)-4,4,7,9a-tetramethyl-2H,3H,3aH,4H,4aH,5H,6H,8aH,9H,9aH-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate

> <JCHEM_LOGP>
4.970537841666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.119142301698442

> <JCHEM_POLAR_SURFACE_AREA>
53.99000000000001

> <JCHEM_REFRACTIVITY>
115.76639999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2R)-2-[(3R,6S)-6-[(2R,3aR,4aS,8aR,9aR)-4,4,7,9a-tetramethyl-2H,3H,3aH,4aH,5H,6H,8aH,9H-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -3.170 -10.606   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -3.437  -9.089   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.258  -8.099   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -0.810  -8.626   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -2.525  -6.583   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.972  -6.056   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.345  -5.593   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.613  -4.076   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.433  -3.086   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.014  -3.613   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.282  -2.096   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.554  -3.613   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.459  -2.367   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.268  -0.893   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.247  -0.893   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.591  -2.843   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.925  -2.073   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      10.259  -2.843   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.259  -4.383   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.592  -5.153   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.925  -5.153   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.591  -4.383   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.258  -5.153   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.924  -4.383   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.763  -5.914   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       3.459  -4.859   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       1.282  -5.129   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       0.102  -6.119   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   30                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   29                                             
CONECT   11   10                                                            
CONECT   12   10   13   28                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   26                                                  
CONECT   15   14   16   17   18                                             
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   15   19   24                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   18   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   14   27   28                                             
CONECT   27   26                                                            
CONECT   28   26   12                                                       
CONECT   29   10   30                                                       
CONECT   30   29    7                                                       
MASTER        0    0    0    0    0    0    0    0   30    0   66    0
END

View in JSmol

Synonyms

Value	Source
Methyl (2R)-2-[(3R,6S)-6-[(2R,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2H,3H,3ah,4H,4ah,5H,6H,8ah,9H,9ah-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoic acid	Generator

Chemical Formula

C₂₅H₄₀O₅

Average Mass

420.5900 Da

Monoisotopic Mass

420.28757 Da

IUPAC Name

methyl (2R)-2-[(3R,6S)-6-[(2R,3aR,4aS,8aR,9aR)-4,4,7,9a-tetramethyl-2H,3H,3aH,4H,4aH,5H,6H,8aH,9H,9aH-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate

Traditional Name

methyl (2R)-2-[(3R,6S)-6-[(2R,3aR,4aS,8aR,9aR)-4,4,7,9a-tetramethyl-2H,3H,3aH,4aH,5H,6H,8aH,9H-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate

CAS Registry Number

Not Available

SMILES

COC(=O)[C@H](C)[C@H]1CC[C@](C)(OO1)[C@H]1C[C@H]2[C@@](C)(C[C@@H]3C=C(C)CC[C@@H]3C2(C)C)O1

InChI Identifier

InChI=1S/C25H40O5/c1-15-8-9-18-17(12-15)14-25(6)20(23(18,3)4)13-21(28-25)24(5)11-10-19(29-30-24)16(2)22(26)27-7/h12,16-21H,8-11,13-14H2,1-7H3/t16-,17+,18+,19-,20-,21-,24+,25-/m1/s1

InChI Key

PNOATZDSQDNWLZ-NJXQHIOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Latrunculia brevis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthofurans. Naphthofurans are compounds containing a furan ring fused to a naphthalene moiety. Furan is a 5 membered- ring aromatic ring with four carbon and one oxygen atoms. Naphthalene is a polycyclic aromatic hydrocarbon made up of two fused benzene rings.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Naphthofurans

Sub Class

Not Available

Direct Parent

Naphthofurans

Alternative Parents

Substituents

Naphthofuran
Ortho-dioxane
Oxolane
Methyl ester
Carboxylic acid ester
Dialkyl peroxide
Monocarboxylic acid or derivatives
Ether
Dialkyl ether
Carboxylic acid derivative
Oxacycle
Hydrocarbon derivative
Organooxygen compound
Organic oxide
Organic oxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.97	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	53.99 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	115.77 m³·mol⁻¹	ChemAxon
Polarizability	48.7 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10267091

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21634589

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate (NP0187165)

MOL for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

3D MOL for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

3D SDF for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

3D-SDF for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

PDB for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

3D PDB for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

SMILES for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

INCHI for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

Structure for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)

3D Structure for NP0187165 (methyl (2r)-2-[(3r,6s)-6-[(2r,3ar,4as,8ar,9ar)-4,4,7,9a-tetramethyl-2h,3h,3ah,4ah,5h,6h,8ah,9h-naphtho[2,3-b]furan-2-yl]-6-methyl-1,2-dioxan-3-yl]propanoate)