NP-MRD: Showing NP-Card for 5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one (NP0186470)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-04 02:19:48 UTC

Updated at

2022-09-04 02:19:48 UTC

NP-MRD ID

NP0186470

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one

Description

TOROMYCIN, also known as antibiotic B21085, belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. 5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one was first documented in 2011 (PMID: 21963505). Based on a literature review very few articles have been published on TOROMYCIN.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042204192D          

 36 40  0  0  1  0            999 V2000
    6.6555    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1154    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3052    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550   -1.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1449   -1.3025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7946   -0.8348    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246   -1.6143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647   -2.2380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744   -1.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546    1.9716    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0647    2.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    2.9071    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1449    3.0630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7946    3.5307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0647    4.3103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845    3.3748    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4444    3.9984    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.5952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0957    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  3 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
  8 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 17 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 32 33  1  1  0  0  0
 32 34  1  0  0  0  0
 26 34  1  0  0  0  0
 34 35  1  6  0  0  0
 25 36  2  0  0  0  0
 20 36  1  0  0  0  0
 14 36  1  0  0  0  0
M  END

     RDKit          3D

 62 66  0  0  0  0  0  0  0  0999 V2000
   -4.2638   -5.0052    0.3390 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7079   -3.7723    0.2439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8656   -2.6046    0.2182 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4299   -1.3460    0.1085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6449   -0.2041    0.0809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2915    0.9770   -0.0285 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6916    1.1106   -0.1140 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2953   -0.3277    0.1634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6957   -1.5878    0.2751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4953   -2.7104    0.3007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3256   -1.6829    0.3571 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1580   -2.8650    0.4578 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4554   -0.6442    0.3358 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0890    0.5362    0.2323 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4561    0.7640    0.1421 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9787    2.0185    0.0357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0784    3.0930    0.0197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6094    4.3646   -0.0878 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9971    4.6130   -0.1816 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2744    2.8829    0.1079 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1217    3.9807    0.0887 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5858    5.2458   -0.0191 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4857    3.8144    0.1762 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0079    2.5491    0.2830 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1722    1.4457    0.3032 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7535    0.1041    0.4099 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7101   -0.5086   -0.8216 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4268   -1.6303   -1.0182 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5967   -2.7141   -1.6754 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0941   -2.2230    0.1824 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2280   -3.0944    0.8398 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6983   -1.1897    1.0963 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1815   -1.3528    2.3809 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2749    0.2265    0.6531 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9366    0.4605   -0.5255 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7909    1.5965    0.2159 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9586   -5.8318    0.3520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2250   -5.2730    0.4076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7883   -3.6274    0.1806 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5066   -1.2748    0.0441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9983    0.8962   -1.1673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9007    2.2092    0.0437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2495    0.5331    0.6250 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9900   -3.6706    0.3883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0097    2.2562   -0.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4400    4.0674   -1.0440 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4455    4.3247    0.7888 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1644    5.6866   -0.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1388    6.0822   -0.0392 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1777    4.6505    0.1642 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0609    2.3944    0.3496 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4319   -0.4962    1.2731 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2349   -1.3802   -1.7711 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0501   -3.0667   -2.6478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5501   -2.3652   -1.8579 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5649   -3.6253   -1.0415 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9461   -2.8532   -0.1839 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6924   -3.6601    1.4997 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7913   -1.2332    1.1685 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6870   -0.8359    3.0574 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5271    0.8529    1.4999 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7866    0.9203   -0.4280 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 18  1  0
 18 17  1  0
 17 16  2  0
 16 15  1  0
 15 14  2  0
 14 13  1  0
 13 11  1  0
 11 12  2  0
 11  9  1  0
  9 10  2  0
 10  3  1  0
  3  2  1  0
  2  1  2  3
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  5  8  2  0
 14 36  1  0
 36 25  2  0
 25 24  1  0
 24 23  2  0
 23 21  1  0
 21 22  1  0
 21 20  2  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32 34  1  0
 34 35  1  0
 20 17  1  0
 34 26  1  0
  8 15  1  0
 20 36  1  0
  8  9  1  0
 19 46  1  0
 19 47  1  0
 19 48  1  0
 16 45  1  0
 10 44  1  0
  2 39  1  0
  1 37  1  0
  1 38  1  0
  4 40  1  0
  7 41  1  0
  7 42  1  0
  7 43  1  0
 24 51  1  0
 23 50  1  0
 22 49  1  0
 26 52  1  1
 28 53  1  6
 29 54  1  0
 29 55  1  0
 29 56  1  0
 30 57  1  6
 31 58  1  0
 32 59  1  1
 33 60  1  0
 34 61  1  1
 35 62  1  0
M  END


  Mrv1652309042204192D          

 36 40  0  0  1  0            999 V2000
    6.6555    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1154    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3052    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0352   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2251   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550   -1.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1449   -1.3025    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9550    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7651    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4149    1.6598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6850    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048    1.5039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    0.7243    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748    0.1007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6048   -0.6789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7946   -0.8348    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246   -1.6143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0647   -2.2380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546   -0.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4444   -0.3671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744   -1.1466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0957    0.2566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1744    1.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845    1.1921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546    1.9716    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0647    2.1275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3347    2.9071    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1449    3.0630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7946    3.5307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0647    4.3103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9845    3.3748    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4444    3.9984    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.5952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0957    2.4393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5246    0.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  3 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
  8 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 17 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 26 25  1  6  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 32 33  1  1  0  0  0
 32 34  1  0  0  0  0
 26 34  1  0  0  0  0
 34 35  1  6  0  0  0
 25 36  2  0  0  0  0
 20 36  1  0  0  0  0
 14 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0186470

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(OC(=O)C3=CC(C=C)=CC(OC)=C23)C2=C(C=CC(O)=C12)[C@H]1O[C@H](C)[C@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C27H26O9/c1-5-12-8-15-19(17(9-12)33-3)14-10-18(34-4)21-16(28)7-6-13(20(21)25(14)36-27(15)32)26-24(31)23(30)22(29)11(2)35-26/h5-11,22-24,26,28-31H,1H2,2-4H3/t11-,22+,23+,24-,26-/m1/s1

> <INCHI_KEY>
MSXWAMODDZJPTG-QGZLGSDISA-N

> <FORMULA>
C27H26O9

> <MOLECULAR_WEIGHT>
494.496

> <EXACT_MASS>
494.157682417

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
50.8430443574929

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

> <JCHEM_LOGP>
2.322187474666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.60562217984705

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.521056476791529

> <JCHEM_PKA_STRONGEST_BASIC>
-3.608539012548343

> <JCHEM_POLAR_SURFACE_AREA>
134.91000000000003

> <JCHEM_REFRACTIVITY>
129.5575

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      12.424   0.188   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.415   1.352   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.903   1.061   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.399  -0.394   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.887  -0.685   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       7.383  -2.140   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       5.870  -2.431   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.879   0.479   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.383   1.934   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.895   2.225   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.375   3.098   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       6.879   4.553   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       4.862   2.807   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.358   1.352   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.366   0.188   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.862  -1.267   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.350  -1.558   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       2.846  -3.013   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       3.854  -4.178   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.342  -0.394   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.830  -0.685   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       0.326  -2.140   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.179   0.479   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.326   1.934   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.838   2.225   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.342   3.680   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       3.854   3.971   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       4.358   5.427   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.870   5.718   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.350   6.591   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       3.854   8.046   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       1.838   6.300   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.830   7.464   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       1.334   4.844   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -0.179   4.553   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       2.846   1.061   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   10                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    8                                                  
CONECT    6    5    7                                                       
CONECT    7    6                                                            
CONECT    8    5    9   15                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9    3                                                       
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   36                                                  
CONECT   15   14    8   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   20                                                  
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20   17   21   36                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   36                                                  
CONECT   26   25   27   34                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   26   35                                                  
CONECT   35   34                                                            
CONECT   36   25   20   14                                                  
MASTER        0    0    0    0    0    0    0    0   36    0   80    0
END

View in JSmol

Synonyms

Value	Source
Antibiotic b 21085	MeSH
Antibiotic b-21085	MeSH
Antibiotic b21085	MeSH

Chemical Formula

C₂₇H₂₆O₉

Average Mass

494.4960 Da

Monoisotopic Mass

494.15768 Da

IUPAC Name

5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

Traditional Name

5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0^{2,7}.0^{11,16}]octadeca-1(10),2,4,6,11,13,15,17-octaen-8-one

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(OC(=O)C3=CC(C=C)=CC(OC)=C23)C2=C(C=CC(O)=C12)[C@H]1O[C@H](C)[C@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C27H26O9/c1-5-12-8-15-19(17(9-12)33-3)14-10-18(34-4)21-16(28)7-6-13(20(21)25(14)36-27(15)32)26-24(31)23(30)22(29)11(2)35-26/h5-11,22-24,26,28-31H,1H2,2-4H3/t11-,22+,23+,24-,26-/m1/s1

InChI Key

MSXWAMODDZJPTG-QGZLGSDISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Phenolic glycosides

Alternative Parents

Substituents

Phenolic glycoside
Naphthopyran
1-naphthol
Isocoumarin
Coumarin
Naphthalene
1-benzopyran
2-benzopyran
Benzopyran
Styrene
Anisole
Pyranone
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Pyran
Oxane
Benzenoid
Heteroaromatic compound
Lactone
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Dialkyl ether
Ether
Polyol
Organic oxide
Hydrocarbon derivative
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.32	ChemAxon
pKa (Strongest Acidic)	8.52	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	134.91 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	129.56 m³·mol⁻¹	ChemAxon
Polarizability	50.84 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

48583

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53802

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yamamuro D, Uchida R, Takahashi Y, Masuma R, Tomoda H: Screening for microbial metabolites affecting phenotype of Caenorhabditis elegans. Biol Pharm Bull. 2011;34(10):1619-23. doi: 10.1248/bpb.34.1619. [PubMed:21963505 ]
LOTUS database [Link]

Showing NP-Card for 5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one (NP0186470)

MOL for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

3D MOL for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

3D SDF for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

3D-SDF for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

PDB for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

3D PDB for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

SMILES for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

INCHI for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

Structure for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)

3D Structure for NP0186470 (5-ethenyl-15-hydroxy-3,17-dimethoxy-12-[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]-9-oxatetracyclo[8.8.0.0²,⁷.0¹¹,¹⁶]octadeca-1(10),2(7),3,5,11(16),12,14,17-octaen-8-one)