NP-MRD: Showing NP-Card for (1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate (NP0186363)

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Record Information

Version

2.0

Created at

2022-09-04 02:11:35 UTC

Updated at

2022-09-04 02:11:35 UTC

NP-MRD ID

NP0186363

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

Description

(8Z)-neovibsanin M belongs to the class of organic compounds known as furofurans. These are organic compounds containing a two furan rings fused to each other. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom. (1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate is found in Viburnum sieboldii. (1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate was first documented in 2010 (PMID: 20233658). Based on a literature review very few articles have been published on (8Z)-neovibsanin M.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042204112D          

 33 35  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309042204112D          

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  9 24  1  0  0  0  0
 24 25  1  6  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0186363

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(C)(C)\C=C\C[C@@]1(C)CC=C2CO[C@H]3C[C@@](C)(OC)O[C@@]23[C@@H]1\C=C/OC(=O)C=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C27H40O6/c1-19(2)16-23(28)31-15-11-21-25(5,13-9-12-24(3,4)29-7)14-10-20-18-32-22-17-26(6,30-8)33-27(20,21)22/h9-12,15-16,21-22H,13-14,17-18H2,1-8H3/b12-9+,15-11-/t21-,22+,25+,26+,27-/m1/s1

> <INCHI_KEY>
VJKNDCFFOHRDMX-NZBFZMOSSA-N

> <FORMULA>
C27H40O6

> <MOLECULAR_WEIGHT>
460.611

> <EXACT_MASS>
460.282489008

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
51.861894288613726

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(Z)-2-[(1S,3S,5S,11S,12R)-3-methoxy-11-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

> <JCHEM_LOGP>
4.825224225666664

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6632454171674644

> <JCHEM_POLAR_SURFACE_AREA>
63.220000000000006

> <JCHEM_REFRACTIVITY>
131.049

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(Z)-2-[(1S,3S,5S,11S,12R)-3-methoxy-11-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      12.677   2.318   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      12.430   3.838   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      10.990   4.384   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.536   5.824   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.444   2.944   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.550   4.930   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.357   3.956   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.917   4.503   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.725   3.529   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.973   4.873   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.891   2.523   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.603   1.010   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.149   0.503   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.553  -0.917   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       3.018  -0.789   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.666   0.710   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.499   1.716   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.096   3.136   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.621   3.581   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.383   4.649   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.217   5.655   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       3.630   3.008   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       3.982   1.509   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.270   3.022   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.104   4.027   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.392   5.540   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.846   6.047   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       5.134   7.560   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       6.588   8.067   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       3.968   8.566   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.256  10.079   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.090  11.085   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       5.710  10.586   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11   24                                             
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   23                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   23                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20   22                                             
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20                                                            
CONECT   22   18   23                                                       
CONECT   23   22   13   16   24                                             
CONECT   24   23    9   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀O₆

Average Mass

460.6110 Da

Monoisotopic Mass

460.28249 Da

IUPAC Name

(Z)-2-[(1S,3S,5S,11S,12R)-3-methoxy-11-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

Traditional Name

(Z)-2-[(1S,3S,5S,11S,12R)-3-methoxy-11-[(2E)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

CAS Registry Number

Not Available

SMILES

COC(C)(C)\C=C\C[C@@]1(C)CC=C2CO[C@H]3C[C@@](C)(OC)O[C@@]23[C@@H]1\C=C/OC(=O)C=C(C)C

InChI Identifier

InChI=1S/C27H40O6/c1-19(2)16-23(28)31-15-11-21-25(5,13-9-12-24(3,4)29-7)14-10-20-18-32-22-17-26(6,30-8)33-27(20,21)22/h9-12,15-16,21-22H,13-14,17-18H2,1-8H3/b12-9+,15-11-/t21-,22+,25+,26+,27-/m1/s1

InChI Key

VJKNDCFFOHRDMX-NZBFZMOSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Viburnum sieboldii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as furofurans. These are organic compounds containing a two furan rings fused to each other. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Furofurans

Sub Class

Not Available

Direct Parent

Furofurans

Alternative Parents

Substituents

Furofuran
Fatty acid ester
Ketal
Monosaccharide
Fatty acyl
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Oxolane
Enol ester
Carboxylic acid ester
Oxacycle
Carboxylic acid derivative
Acetal
Monocarboxylic acid or derivatives
Dialkyl ether
Ether
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.83	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	63.22 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	131.05 m³·mol⁻¹	ChemAxon
Polarizability	51.86 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

24678683

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

46884910

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kubo M, Kishimoto Y, Harada K, Hioki H, Fukuyama Y: NGF-potentiating vibsane-type diterpenoids from Viburnum sieboldii. Bioorg Med Chem Lett. 2010 Apr 15;20(8):2566-71. doi: 10.1016/j.bmcl.2010.02.085. Epub 2010 Feb 25. [PubMed:20233658 ]
LOTUS database [Link]

Showing NP-Card for (1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate (NP0186363)

MOL for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D MOL for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D SDF for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D-SDF for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

PDB for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D PDB for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

SMILES for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

INCHI for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

Structure for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D Structure for NP0186363 ((1z)-2-[(1s,3s,5s,11s,12r)-3-methoxy-11-[(2e)-4-methoxy-4-methylpent-2-en-1-yl]-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)