NP-MRD: Showing NP-Card for (3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one (NP0185832)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-04 01:24:53 UTC

Updated at

2022-09-04 01:24:54 UTC

NP-MRD ID

NP0185832

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one

Description

(3R,6S,9S,13R)-6,9-dibenzyl-3-[(2S)-butan-2-yl]-13-[(2S)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Based on a literature review very few articles have been published on (3R,6S,9S,13R)-6,9-dibenzyl-3-[(2S)-butan-2-yl]-13-[(2S)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042203242D          

 41 43  0  0  1  0            999 V2000
   -2.9331   -0.4550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2187   -0.0425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5042   -0.4550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7897   -0.0425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0753   -0.4550    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0753   -1.2800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6392   -0.0425    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0095    0.4904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3218    1.2540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1124    1.9556    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1445    1.1930    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8817    1.7142    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7881    2.5339    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4512    3.0248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3576    3.8445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0207    4.3353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7773    4.0065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8709    3.1868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2078    2.6960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6453    1.4019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2975    1.9071    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7566    0.5845    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5202    0.2722    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1725    0.7773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9361    0.4650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5883    0.9701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3519    0.6578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4633   -0.1596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8110   -0.6648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0474   -0.3525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6315   -0.5453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3951   -0.8576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9792   -1.0504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2156   -0.7381    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3270   -1.5556    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6747   -2.0607    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0906   -1.8679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2019   -2.6853    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5634   -1.2433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1729   -1.9700    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7998   -0.9309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  7  5  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  4  0  0  0
  9 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 12 20  1  0  0  0  0
 20 21  1  4  0  0  0
 20 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  1  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 25 30  1  0  0  0  0
 23 31  1  0  0  0  0
 31 32  1  4  0  0  0
 31 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  1  0  0  0
 35 36  1  6  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 34 39  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
  7 41  1  0  0  0  0
M  END

     RDKit          3D

 86 88  0  0  0  0  0  0  0  0999 V2000
    7.0312   -0.2560    2.0018 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1769   -1.1233    1.0884 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1896   -0.1849    0.4167 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2749   -0.9445   -0.5278 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3348    0.0576   -1.1615 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1783    1.0587   -1.8918 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4143    0.6285   -0.1456 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4283    1.6576   -0.6709 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4030    1.1827   -1.5754 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7497    0.3181   -2.6089 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8542    1.4684   -1.5528 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5198    2.3359   -0.6073 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1757    3.7335   -0.9487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7283    4.7968   -0.1138 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1247    5.1440    1.0959 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6056    6.1604    1.8863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7140    6.8854    1.5132 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3248    6.5623    0.3266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8248    5.5242   -0.4708 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9449    1.9555   -0.6558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8711    2.7657   -1.3055 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3008    0.8553   -0.0825 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4853   -0.0798    0.6150 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3965   -0.7983    1.6217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5079   -1.5100    0.9585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4192   -2.8217    0.5459 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4892   -3.4568   -0.0761 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6713   -2.7872   -0.2967 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7769   -1.4811    0.1075 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7062   -0.8731    0.7204 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9324   -1.1342   -0.3235 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8639   -1.5133   -1.3164 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8469   -1.5827   -0.2296 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4104   -2.0473   -0.0553 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5513   -3.5544    0.1344 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0004   -4.3065   -1.0544 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0035   -3.9559    0.2333 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1574   -5.4501    0.4193 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2068   -1.3075    1.0048 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1728   -1.9472    2.1197 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8152   -0.1814    0.7521 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3588    0.4783    2.4897 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5109   -0.8488    2.7924 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7776    0.2675    1.3488 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7613   -1.7123    0.3829 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6203   -1.8177    1.7642 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7554    0.5924   -0.0932 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6258    0.2795    1.2504 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8386   -1.5383   -1.2445 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6175   -1.5969    0.1078 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7510   -0.5186   -1.9078 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0910    0.6085   -2.3357 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6186    1.5120   -2.7362 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5243    1.8956   -1.2606 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0973    1.3253    0.4889 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9384    2.0251    0.2853 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9689    2.5699   -1.0367 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8238    0.5642   -3.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1958    2.1423    0.4400 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0484    3.8232   -0.9240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3833    3.9285   -2.0530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2489    4.5639    1.3817 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1316    6.4254    2.8255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1068    7.6960    2.1310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1978    7.1217    0.0178 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3505    5.3437   -1.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6090    3.2665   -0.8291 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6786    0.3509    1.2364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7821   -1.5124    2.2313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8329   -0.0774    2.3273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5182   -3.3850    0.6965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3957   -4.5003   -0.3958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5060   -3.3046   -0.7893 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7256   -0.9824   -0.0825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7962    0.1726    1.0414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7660   -1.0409   -2.2192 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0231   -1.8636   -0.9924 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0485   -3.8242    1.0645 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7842   -4.5119   -1.7809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8944   -3.8030   -1.4961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3651   -5.2851   -0.6742 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4973   -3.4768    1.0948 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5852   -3.6378   -0.6637 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5489   -5.9361   -0.3941 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7510   -5.8046    1.3696 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2014   -5.7679    0.2194 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 12 20  1  0
 20 21  1  0
 20 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 23 31  1  0
 31 32  1  0
 31 33  2  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
 35 37  1  0
 37 38  1  0
 34 39  1  0
 39 40  2  0
 39 41  1  0
 41  7  1  0
 19 14  1  0
 30 25  1  0
  1 42  1  0
  1 43  1  0
  1 44  1  0
  2 45  1  0
  2 46  1  0
  3 47  1  0
  3 48  1  0
  4 49  1  0
  4 50  1  0
  5 51  1  6
  6 52  1  0
  6 53  1  0
  6 54  1  0
  7 55  1  1
  8 56  1  0
  8 57  1  0
 10 58  1  0
 12 59  1  1
 13 60  1  0
 13 61  1  0
 15 62  1  0
 16 63  1  0
 17 64  1  0
 18 65  1  0
 19 66  1  0
 21 67  1  0
 23 68  1  1
 24 69  1  0
 24 70  1  0
 26 71  1  0
 27 72  1  0
 28 73  1  0
 29 74  1  0
 30 75  1  0
 32 76  1  0
 34 77  1  6
 35 78  1  1
 36 79  1  0
 36 80  1  0
 36 81  1  0
 37 82  1  0
 37 83  1  0
 38 84  1  0
 38 85  1  0
 38 86  1  0
M  END


  Mrv1652309042203242D          

 41 43  0  0  1  0            999 V2000
   -2.9331   -0.4550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2187   -0.0425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5042   -0.4550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7897   -0.0425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0753   -0.4550    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0753   -1.2800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6392   -0.0425    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0095    0.4904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3218    1.2540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1124    1.9556    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1445    1.1930    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8817    1.7142    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7881    2.5339    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4512    3.0248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3576    3.8445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0207    4.3353    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7773    4.0065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8709    3.1868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2078    2.6960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6453    1.4019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2975    1.9071    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7566    0.5845    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5202    0.2722    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1725    0.7773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9361    0.4650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5883    0.9701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3519    0.6578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4633   -0.1596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8110   -0.6648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0474   -0.3525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6315   -0.5453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3951   -0.8576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9792   -1.0504    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2156   -0.7381    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3270   -1.5556    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6747   -2.0607    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0906   -1.8679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2019   -2.6853    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5634   -1.2433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1729   -1.9700    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7998   -0.9309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  7  5  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  4  0  0  0
  9 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 12 20  1  0  0  0  0
 20 21  1  4  0  0  0
 20 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  1  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 25 30  1  0  0  0  0
 23 31  1  0  0  0  0
 31 32  1  4  0  0  0
 31 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  1  0  0  0
 35 36  1  6  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 34 39  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
  7 41  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0185832

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCC[C@H](C)[C@H]1CC(O)=N[C@@H](CC2=CC=CC=C2)C(O)=N[C@@H](CC2=CC=CC=C2)C(O)=N[C@H]([C@@H](C)CC)C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C33H45N3O5/c1-5-7-14-23(4)28-21-29(37)34-26(19-24-15-10-8-11-16-24)31(38)35-27(20-25-17-12-9-13-18-25)32(39)36-30(22(3)6-2)33(40)41-28/h8-13,15-18,22-23,26-28,30H,5-7,14,19-21H2,1-4H3,(H,34,37)(H,35,38)(H,36,39)/t22-,23-,26-,27-,28+,30+/m0/s1

> <INCHI_KEY>
ALDJPDCIFHQIAL-XVXWBGNPSA-N

> <FORMULA>
C33H45N3O5

> <MOLECULAR_WEIGHT>
563.739

> <EXACT_MASS>
563.335921561

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
86

> <JCHEM_AVERAGE_POLARIZABILITY>
63.0768282342253

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,6S,9S,13R)-6,9-dibenzyl-3-[(2S)-butan-2-yl]-13-[(2S)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one

> <JCHEM_LOGP>
5.082349330261018

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
2.7282385182685673

> <JCHEM_PKA_STRONGEST_ACIDIC>
-0.7583964023055447

> <JCHEM_PKA_STRONGEST_BASIC>
8.423447153320918

> <JCHEM_POLAR_SURFACE_AREA>
124.07000000000001

> <JCHEM_REFRACTIVITY>
159.06240000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(3R,6S,9S,13R)-6,9-dibenzyl-3-[(2S)-butan-2-yl]-13-[(2S)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -5.475  -0.849   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.142  -0.079   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.808  -0.849   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.474  -0.079   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.140  -0.849   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.140  -2.389   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.193  -0.079   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.018   0.916   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.601   2.341   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.210   3.650   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0       2.136   2.227   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       3.512   3.200   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.338   4.730   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.576   5.646   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.401   7.176   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.639   8.093   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.051   7.479   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.226   5.949   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.988   5.032   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.938   2.617   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.155   3.560   0.000  0.00  0.00           O+0
HETATM   22  N   UNK     0       5.146   1.091   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       6.571   0.508   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.789   1.451   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.214   0.868   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.432   1.811   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.857   1.228   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      12.065  -0.298   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.847  -1.241   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       9.422  -0.658   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.779  -1.018   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       8.204  -1.601   0.000  0.00  0.00           O+0
HETATM   33  N   UNK     0       5.561  -1.961   0.000  0.00  0.00           N+0
HETATM   34  C   UNK     0       4.136  -1.378   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       4.344  -2.904   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       3.126  -3.847   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.769  -3.487   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       5.977  -5.013   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.918  -2.321   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       2.190  -3.677   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0       1.493  -1.738   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   41                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   20                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   14                                                       
CONECT   20   12   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24   31                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   30                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   25                                                       
CONECT   31   23   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   35   39                                                  
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37                                                            
CONECT   39   34   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39    7                                                       
MASTER        0    0    0    0    0    0    0    0   41    0   86    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₄₅N₃O₅

Average Mass

563.7390 Da

Monoisotopic Mass

563.33592 Da

IUPAC Name

(3R,6S,9S,13R)-6,9-dibenzyl-3-[(2S)-butan-2-yl]-13-[(2S)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one

Traditional Name

(3R,6S,9S,13R)-6,9-dibenzyl-3-[(2S)-butan-2-yl]-13-[(2S)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one

CAS Registry Number

Not Available

SMILES

CCCC[C@H](C)[C@H]1CC(O)=N[C@@H](CC2=CC=CC=C2)C(O)=N[C@@H](CC2=CC=CC=C2)C(O)=N[C@H]([C@@H](C)CC)C(=O)O1

InChI Identifier

InChI=1S/C33H45N3O5/c1-5-7-14-23(4)28-21-29(37)34-26(19-24-15-10-8-11-16-24)31(38)35-27(20-25-17-12-9-13-18-25)32(39)36-30(22(3)6-2)33(40)41-28/h8-13,15-18,22-23,26-28,30H,5-7,14,19-21H2,1-4H3,(H,34,37)(H,35,38)(H,36,39)/t22-,23-,26-,27-,28+,30+/m0/s1

InChI Key

ALDJPDCIFHQIAL-XVXWBGNPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Depsipeptides

Direct Parent

Cyclic depsipeptides

Alternative Parents

Substituents

Cyclic depsipeptide
Alpha-amino acid ester
Macrolactam
Macrolide
Alpha-amino acid or derivatives
Monocyclic benzene moiety
Benzenoid
Cyclic carboximidic acid
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Oxacycle
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Polyol
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Organic oxygen compound
Organopnictogen compound
Carbonyl group
Organonitrogen compound
Organooxygen compound
Organic nitrogen compound
Organic oxide
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.08	ChemAxon
pKa (Strongest Acidic)	-0.76	ChemAxon
pKa (Strongest Basic)	8.42	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	124.07 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	159.06 m³·mol⁻¹	ChemAxon
Polarizability	63.08 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162963692

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one (NP0185832)

MOL for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

3D MOL for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

3D SDF for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

3D-SDF for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

PDB for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

3D PDB for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

SMILES for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

INCHI for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

Structure for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)

3D Structure for NP0185832 ((3r,6s,9s,13r)-6,9-dibenzyl-3-[(2s)-butan-2-yl]-13-[(2s)-hexan-2-yl]-5,8,11-trihydroxy-1-oxa-4,7,10-triazacyclotrideca-4,7,10-trien-2-one)