NP-MRD: Showing NP-Card for (4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one (NP0185762)

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Record Information

Version

2.0

Created at

2022-09-04 01:18:19 UTC

Updated at

2022-09-04 01:18:19 UTC

NP-MRD ID

NP0185762

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one

Description

Sargachromanol I belongs to the class of organic compounds known as vitamin e compounds. These are a group of fat-soluble compounds containing or derived either from a tocopherol or a tocotrienol skeleton. (4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one is found in Sargassum siliquastrum. (4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one was first documented in 2015 (PMID: 25315050). Based on a literature review very few articles have been published on Sargachromanol I (PMID: 31200287).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042203182D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309042203182D          

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M  END
> <DATABASE_ID>
NP0185762

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CCC\C(C)=C\CC[C@]1(C)CCC2=CC(O)=CC(C)=C2O1)C(=O)[C@H](O)C=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C27H40O4/c1-18(2)15-24(29)25(30)20(4)11-7-9-19(3)10-8-13-27(6)14-12-22-17-23(28)16-21(5)26(22)31-27/h10,15-17,20,24,28-29H,7-9,11-14H2,1-6H3/b19-10+/t20?,24-,27-/m1/s1

> <INCHI_KEY>
SARNJEPZDCTAHR-ZAGCOSOKSA-N

> <FORMULA>
C27H40O4

> <MOLECULAR_WEIGHT>
428.613

> <EXACT_MASS>
428.292659768

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
51.37486014265711

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4R,10E)-4-hydroxy-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one

> <JCHEM_LOGP>
7.031306514666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.986687801297691

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.141053668656449

> <JCHEM_PKA_STRONGEST_BASIC>
-3.661015498076166

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
128.99719999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(4R,10E)-4-hydroxy-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.660 -14.264   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.326 -13.494   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.326 -11.954   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.008 -14.264   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.341 -13.494   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.341 -11.954   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.675 -14.264   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.675 -15.804   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.009 -13.494   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.009 -11.954   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.342 -14.264   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.676 -13.494   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.010 -14.264   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.343 -13.494   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.343 -11.954   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.677 -14.264   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.011 -13.494   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.344 -14.264   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      14.678 -13.494   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      15.205 -14.942   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      13.688 -12.315   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      14.215 -10.868   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      15.732 -10.600   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      16.258  -9.153   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      17.775  -8.886   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      18.302  -7.439   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      18.765 -10.065   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      18.238 -11.513   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      19.228 -12.692   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      16.721 -11.780   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      16.195 -13.227   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21   31                                             
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   30                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   23   31                                                  
CONECT   31   30   19                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀O₄

Average Mass

428.6130 Da

Monoisotopic Mass

428.29266 Da

IUPAC Name

(4R,10E)-4-hydroxy-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one

Traditional Name

(4R,10E)-4-hydroxy-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one

CAS Registry Number

Not Available

SMILES

CC(CCC\C(C)=C\CC[C@]1(C)CCC2=CC(O)=CC(C)=C2O1)C(=O)[C@H](O)C=C(C)C

InChI Identifier

InChI=1S/C27H40O4/c1-18(2)15-24(29)25(30)20(4)11-7-9-19(3)10-8-13-27(6)14-12-22-17-23(28)16-21(5)26(22)31-27/h10,15-17,20,24,28-29H,7-9,11-14H2,1-6H3/b19-10+/t20?,24-,27-/m1/s1

InChI Key

SARNJEPZDCTAHR-ZAGCOSOKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sargassum siliquastrum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as vitamin e compounds. These are a group of fat-soluble compounds containing or derived either from a tocopherol or a tocotrienol skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Quinone and hydroquinone lipids

Direct Parent

Vitamin E compounds

Alternative Parents

Substituents

Farsesane sesquiterpenoid
Sesquiterpenoid
Chromane
Benzopyran
1-benzopyran
Fatty alcohol
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Acyloin
Fatty acyl
Benzenoid
Monosaccharide
Alpha-hydroxy ketone
Secondary alcohol
Ketone
Oxacycle
Organoheterocyclic compound
Ether
Alcohol
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Aldehyde
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.03	ChemAxon
pKa (Strongest Acidic)	10.14	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	129 m³·mol⁻¹	ChemAxon
Polarizability	51.37 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00042955

Chemspider ID

9616630

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11441767

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Lee JP, Kang MG, Lee JY, Oh JM, Baek SC, Leem HH, Park D, Cho ML, Kim H: Potent inhibition of acetylcholinesterase by sargachromanol I from Sargassum siliquastrum and by selected natural compounds. Bioorg Chem. 2019 Aug;89:103043. doi: 10.1016/j.bioorg.2019.103043. Epub 2019 Jun 6. [PubMed:31200287 ]
Pak WM, Kim KB, Kim MJ, Cho JY, Ahn DH: Inhibitory effect of hexane fraction from Myagropsis myagroides on pancreatic alpha-amylase in vitro. J Microbiol Biotechnol. 2015 Mar;25(3):328-33. doi: 10.4014/jmb.1409.09012. [PubMed:25315050 ]
LOTUS database [Link]

Showing NP-Card for (4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one (NP0185762)

MOL for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

3D MOL for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

3D SDF for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

3D-SDF for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

PDB for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

3D PDB for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

SMILES for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

INCHI for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

Structure for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)

3D Structure for NP0185762 ((4r,10e)-4-hydroxy-13-[(2r)-6-hydroxy-2,8-dimethyl-3,4-dihydro-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,10-dien-5-one)