NP-MRD: Showing NP-Card for (1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one (NP0185556)

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Record Information

Version

2.0

Created at

2022-09-04 01:00:52 UTC

Updated at

2022-09-04 01:00:52 UTC

NP-MRD ID

NP0185556

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one

Description

(+)-Norsecurinine belongs to the class of organic compounds known as pyrrolizidines. Pyrrolizidines are compounds containing a pyrrolizidine, which is a bicyclic ring system made up of two fused pyrrolidine ring sharing a nitrogen atom. (1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one is found in Flueggea virosa. (1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one was first documented in 2009 (PMID: 19627163). Based on a literature review very few articles have been published on (+)-Norsecurinine (PMID: 21037961).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 28 31  0  0  0  0  0  0  0  0999 V2000
   -2.4695   -3.3655    0.9869 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0015   -2.2589    0.6104 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6662   -1.3336   -0.3322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9183   -0.2805   -0.5147 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9703    0.9527   -1.2720 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1426    1.9705   -0.9433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0646    1.7420    0.0437 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5784    0.7820    1.1113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6814   -0.4840    0.2782 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7890   -1.6613    0.9774 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5284   -0.3999   -0.6231 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6348   -1.3127   -0.2140 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6907   -0.4209    0.3918 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1851    0.9805    0.2519 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9946    0.9520   -0.5508 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6304   -1.5325   -0.7858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6812    1.0259   -2.0876 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2518    2.9380   -1.3834 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3026    2.6662    0.5066 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1048    0.6814    1.9538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5447    1.1578    1.4405 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2142   -0.6264   -1.6814 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2622   -2.0489    0.5164 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0238   -1.8531   -1.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6606   -0.6015   -0.1100 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8383   -0.7044    1.4710 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9462    1.6517   -0.2043 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0036    1.3833    1.2741 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2 10  1  0
  9 10  1  1
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  2  0
  5  4  1  0
  4  3  2  0
  7 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 11  1  0
  3  2  1  0
 11 15  1  0
  4  9  1  0
 11  9  1  0
  8 20  1  0
  8 21  1  0
  7 19  1  1
  6 18  1  0
  5 17  1  0
  3 16  1  0
 14 27  1  0
 14 28  1  0
 13 25  1  0
 13 26  1  0
 12 23  1  0
 12 24  1  0
 11 22  1  6
M  END


  Mrv1652309042203002D          

 15 18  0  0  1  0            999 V2000
    0.6342   -1.9440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1543   -1.3036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9385   -0.5034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6324   -0.0424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6922    0.8247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4833    1.1489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1617    0.6173    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7071    0.0270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3395   -0.5794    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9855   -1.3510    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2153   -0.7843    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7268   -1.4316    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5005   -1.1452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4672   -0.3209    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6729   -0.0978    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  9  8  1  1  0  0  0
  4  9  1  0  0  0  0
  9 10  1  0  0  0  0
  2 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 11 15  1  1  0  0  0
  7 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0185556

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O=C1O[C@]23C[C@H](C=CC2=C1)N1CCC[C@@H]31

> <INCHI_IDENTIFIER>
InChI=1S/C12H13NO2/c14-11-6-8-3-4-9-7-12(8,15-11)10-2-1-5-13(9)10/h3-4,6,9-10H,1-2,5,7H2/t9-,10-,12+/m0/s1

> <INCHI_KEY>
NBGOALXYAZVRPS-JBLDHEPKSA-N

> <FORMULA>
C12H13NO2

> <MOLECULAR_WEIGHT>
203.241

> <EXACT_MASS>
203.094628663

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
21.050608448349255

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,8R,13S)-2-oxa-9-azatetracyclo[6.5.1.0^{1,5}.0^{9,13}]tetradeca-4,6-dien-3-one

> <JCHEM_LOGP>
0.9609451540000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
9.04655039836761

> <JCHEM_POLAR_SURFACE_AREA>
29.54

> <JCHEM_REFRACTIVITY>
56.718100000000014

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,8R,13S)-2-oxa-9-azatetracyclo[6.5.1.0^{1,5}.0^{9,13}]tetradeca-4,6-dien-3-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  O   UNK     0       1.184  -3.629   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.155  -2.433   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.752  -0.940   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.047  -0.079   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.159   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.636   2.145   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.902   1.152   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.053   0.050   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.367  -1.082   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       3.706  -2.522   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       6.002  -1.464   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.957  -2.672   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.401  -2.138   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.339  -0.599   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0       6.856  -0.183   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   15                                                  
CONECT    8    7    9                                                       
CONECT    9    8    4   10   11                                             
CONECT   10    9    2                                                       
CONECT   11    9   12   15                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   11    7                                                  
MASTER        0    0    0    0    0    0    0    0   15    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₁₃NO₂

Average Mass

203.2410 Da

Monoisotopic Mass

203.09463 Da

IUPAC Name

(1R,8R,13S)-2-oxa-9-azatetracyclo[6.5.1.0^{1,5}.0^{9,13}]tetradeca-4,6-dien-3-one

Traditional Name

(1R,8R,13S)-2-oxa-9-azatetracyclo[6.5.1.0^{1,5}.0^{9,13}]tetradeca-4,6-dien-3-one

CAS Registry Number

Not Available

SMILES

O=C1O[C@]23C[C@H](C=CC2=C1)N1CCC[C@@H]31

InChI Identifier

InChI=1S/C12H13NO2/c14-11-6-8-3-4-9-7-12(8,15-11)10-2-1-5-13(9)10/h3-4,6,9-10H,1-2,5,7H2/t9-,10-,12+/m0/s1

InChI Key

NBGOALXYAZVRPS-JBLDHEPKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Flueggea virosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrrolizidines. Pyrrolizidines are compounds containing a pyrrolizidine, which is a bicyclic ring system made up of two fused pyrrolidine ring sharing a nitrogen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrrolizidines

Sub Class

Not Available

Direct Parent

Pyrrolizidines

Alternative Parents

Substituents

Pyrrolizidine
Azepine
2-furanone
N-alkylpyrrolidine
Dihydrofuran
Pyrrolidine
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Tertiary aliphatic amine
Tertiary amine
Amino acid or derivatives
Carboxylic acid ester
Lactone
Oxacycle
Azacycle
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organonitrogen compound
Organooxygen compound
Carbonyl group
Organic oxygen compound
Amine
Organic nitrogen compound
Organic oxide
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.96	ChemAxon
pKa (Strongest Basic)	9.05	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	29.54 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	56.72 m³·mol⁻¹	ChemAxon
Polarizability	21.05 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

22906478

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11830512

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Medeiros MR, Wood JL: An Enantioselective Approach to the Securinega Alkaloids: The Total Synthesis of (+)-Norsecurinine and (+)-Allonorsecurinine. Tetrahedron. 2010 Jun 26;66(26):4701-4709. doi: 10.1016/j.tet.2010.03.015. [PubMed:21037961 ]
Gonzalez-Galvez D, Garcia-Garcia E, Alibes R, Bayon P, de March P, Figueredo M, Font J: Enantioselective approach to Securinega alkaloids. Total synthesis of securinine and (-)-norsecurinine. J Org Chem. 2009 Aug 21;74(16):6199-211. doi: 10.1021/jo901059n. [PubMed:19627163 ]
LOTUS database [Link]

Showing NP-Card for (1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one (NP0185556)

MOL for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

3D MOL for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

3D SDF for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

3D-SDF for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

PDB for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

3D PDB for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

SMILES for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

INCHI for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

Structure for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)

3D Structure for NP0185556 ((1r,8r,13s)-2-oxa-9-azatetracyclo[6.5.1.0¹,⁵.0⁹,¹³]tetradeca-4,6-dien-3-one)