NP-MRD: Showing NP-Card for 2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid (NP0184953)

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Record Information

Version

1.0

Created at

2022-09-04 00:13:11 UTC

Updated at

2022-09-04 00:13:12 UTC

NP-MRD ID

NP0184953

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid

Description

2,5-Dihydroxybenzoic acid 5-O-beta-D-glucoside, also known as gentisic acid 5-beta-D-glucoside or 5-(b-D-glucosyloxy)-2-hydroxybenzoic acid, belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. 2,5-Dihydroxybenzoic acid 5-O-beta-D-glucoside is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. 2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid is found in Castanopsis fissa and Picnomon acarna. It was first documented in 2014 (PMID: 25173843). Based on a literature review very few articles have been published on 2,5-dihydroxybenzoic acid 5-O-beta-D-glucoside.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 38 39  0  0  0  0  0  0  0  0999 V2000
    4.9754   -0.6575   -2.3136 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1885   -0.6331   -1.0755 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4716   -0.7864   -0.6102 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0728   -0.4434   -0.1695 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8182   -0.3000   -0.7770 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6919   -0.1144    0.0017 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4757    0.0235   -0.6111 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7723    0.2157   -0.0631 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5344   -0.9323   -0.3999 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6838   -0.8590    0.3832 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.3825   -2.1915    0.3896 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7645   -2.6040   -0.8780 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5394    0.2454   -0.1869 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8341    0.2351    0.2705 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8164    1.5561    0.1313 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5424    2.6257   -0.3555 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4692    1.4631   -0.5779 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6633    2.5435   -0.2372 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8096   -0.0714    1.3725 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0212   -0.2088    1.9847 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1815   -0.3992    1.2016 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3667   -0.5322    1.8316 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1602   -0.0975   -0.9494 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6957   -0.3300   -1.8591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8349    0.2712    1.0327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3838   -0.6108    1.4043 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2296   -2.1329    1.1002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6577   -2.9358    0.7799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3934   -1.9607   -1.2824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4762    0.1463   -1.3007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9685    0.7828    1.0716 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6243    1.6381    1.2228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9127    3.3485   -0.6530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6260    1.3446   -1.6505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1317    3.1306    0.4157 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9105    0.0752    1.9586 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1251   -0.1764    3.0659 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2764   -0.6681    1.5308 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 21  4  1  0
  4  5  2  0
  4  2  1  0
  2  3  1  0
  2  1  2  0
  8 17  1  0
 17 18  1  0
 17 15  1  0
 15 16  1  0
 15 13  1  0
 13 14  1  0
 13 10  1  0
  5  6  1  0
 12 29  1  0
 11 27  1  0
 11 28  1  0
 10 26  1  1
  8 25  1  1
 19 36  1  0
 20 37  1  0
 22 38  1  0
  5 24  1  0
  3 23  1  0
 17 34  1  6
 18 35  1  0
 15 32  1  1
 16 33  1  0
 13 30  1  6
 14 31  1  0
M  END


  Mrv1652309042202132D          

 22 23  0  0  1  0            999 V2000
    1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  6  0  0  0
 15 17  1  0  0  0  0
  8 17  1  0  0  0  0
 17 18  1  1  0  0  0
  6 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
  4 21  1  0  0  0  0
 21 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0184953

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@H]1O[C@@H](OC2=CC=C(O)C(=C2)C(O)=O)[C@H](O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C13H16O9/c14-4-8-9(16)10(17)11(18)13(22-8)21-5-1-2-7(15)6(3-5)12(19)20/h1-3,8-11,13-18H,4H2,(H,19,20)/t8-,9-,10+,11-,13-/m1/s1

> <INCHI_KEY>
CBTFERBMQQAROP-BZNQNGANSA-N

> <FORMULA>
C13H16O9

> <MOLECULAR_WEIGHT>
316.262

> <EXACT_MASS>
316.079432095

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
28.87893632458766

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-hydroxy-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid

> <JCHEM_LOGP>
-0.5943700126666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.193550798159206

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.5120852774638807

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981092343694713

> <JCHEM_POLAR_SURFACE_AREA>
156.91

> <JCHEM_REFRACTIVITY>
69.42039999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
2-hydroxy-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  O   UNK     0       2.667   0.000   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.335   0.000   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       8.002  -7.700   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.336 -10.010   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      10.669  -9.240   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.668 -10.010   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       6.668 -11.550   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.001 -10.010   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.001  -6.930   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   21                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   19                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   17                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   13                                                  
CONECT   11   10   12                                                       
CONECT   12   11                                                            
CONECT   13   10   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15    8   18                                                  
CONECT   18   17                                                            
CONECT   19    6   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20    4   22                                                  
CONECT   22   21                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   46    0
END

View in JSmol

Synonyms

Value	Source
2,5-Dihydroxybenzoic acid 5-beta-D-glucoside	ChEBI
2,5-Dihydroxybenzoic acid 5-beta-glucoside	ChEBI
2,5-Dihydroxybenzoic acid 5-O-beta-glucoside	ChEBI
5-(beta-D-Glucosyloxy)-2-hydroxybenzoic acid	ChEBI
Gentisic acid 5-beta-D-glucoside	ChEBI
Gentisic acid 5-beta-glucoside	ChEBI
Gentisic acid 5-O-beta-D-glucoside	ChEBI
Gentisic acid 5-O-beta-glucoside	ChEBI
2,5-Dihydroxybenzoate 5-b-D-glucoside	Generator
2,5-Dihydroxybenzoate 5-beta-D-glucoside	Generator
2,5-Dihydroxybenzoate 5-β-D-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-b-D-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-β-D-glucoside	Generator
2,5-Dihydroxybenzoate 5-b-glucoside	Generator
2,5-Dihydroxybenzoate 5-beta-glucoside	Generator
2,5-Dihydroxybenzoate 5-β-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-b-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-β-glucoside	Generator
2,5-Dihydroxybenzoate 5-O-b-glucoside	Generator
2,5-Dihydroxybenzoate 5-O-beta-glucoside	Generator
2,5-Dihydroxybenzoate 5-O-β-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-O-b-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-O-β-glucoside	Generator
5-(b-D-Glucosyloxy)-2-hydroxybenzoate	Generator
5-(b-D-Glucosyloxy)-2-hydroxybenzoic acid	Generator
5-(beta-D-Glucosyloxy)-2-hydroxybenzoate	Generator
5-(Β-D-glucosyloxy)-2-hydroxybenzoate	Generator
5-(Β-D-glucosyloxy)-2-hydroxybenzoic acid	Generator
Gentisate 5-b-D-glucoside	Generator
Gentisate 5-beta-D-glucoside	Generator
Gentisate 5-β-D-glucoside	Generator
Gentisic acid 5-b-D-glucoside	Generator
Gentisic acid 5-β-D-glucoside	Generator
Gentisate 5-b-glucoside	Generator
Gentisate 5-beta-glucoside	Generator
Gentisate 5-β-glucoside	Generator
Gentisic acid 5-b-glucoside	Generator
Gentisic acid 5-β-glucoside	Generator
Gentisate 5-O-b-D-glucoside	Generator
Gentisate 5-O-beta-D-glucoside	Generator
Gentisate 5-O-β-D-glucoside	Generator
Gentisic acid 5-O-b-D-glucoside	Generator
Gentisic acid 5-O-β-D-glucoside	Generator
Gentisate 5-O-b-glucoside	Generator
Gentisate 5-O-beta-glucoside	Generator
Gentisate 5-O-β-glucoside	Generator
Gentisic acid 5-O-b-glucoside	Generator
Gentisic acid 5-O-β-glucoside	Generator
2,5-Dihydroxybenzoate 5-O-b-D-glucoside	Generator
2,5-Dihydroxybenzoate 5-O-beta-D-glucoside	Generator
2,5-Dihydroxybenzoate 5-O-β-D-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-O-b-D-glucoside	Generator
2,5-Dihydroxybenzoic acid 5-O-β-D-glucoside	Generator

Chemical Formula

C₁₃H₁₆O₉

Average Mass

316.2620 Da

Monoisotopic Mass

316.07943 Da

IUPAC Name

2-hydroxy-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid

Traditional Name

2-hydroxy-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid

CAS Registry Number

Not Available

SMILES

OC[C@H]1O[C@@H](OC2=CC=C(O)C(=C2)C(O)=O)[C@H](O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C13H16O9/c14-4-8-9(16)10(17)11(18)13(22-8)21-5-1-2-7(15)6(3-5)12(19)20/h1-3,8-11,13-18H,4H2,(H,19,20)/t8-,9-,10+,11-,13-/m1/s1

InChI Key

CBTFERBMQQAROP-BZNQNGANSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Castanopsis fissa	LOTUS Database	35616633
Picnomon acarna	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Phenolic glycosides

Alternative Parents

Substituents

Phenolic glycoside
Hexose monosaccharide
O-glycosyl compound
Hydroxybenzoic acid
Salicylic acid
Salicylic acid or derivatives
4-alkoxyphenol
Benzoic acid or derivatives
Benzoic acid
Phenoxy compound
Phenol ether
Benzoyl
1-hydroxy-2-unsubstituted benzenoid
Phenol
Sugar acid
Monosaccharide
Benzenoid
Monocyclic benzene moiety
Oxane
Vinylogous acid
Secondary alcohol
Monocarboxylic acid or derivatives
Acetal
Carboxylic acid
Carboxylic acid derivative
Organoheterocyclic compound
Oxacycle
Polyol
Primary alcohol
Hydrocarbon derivative
Organic oxide
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.59	ChemAxon
pKa (Strongest Acidic)	2.51	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	156.91 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	69.42 m³·mol⁻¹	ChemAxon
Polarizability	28.88 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9089323

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10914066

PDB ID

Not Available

ChEBI ID

136772

Good Scents ID

Not Available

References

General References

Li X, Svedin E, Mo H, Atwell S, Dilkes BP, Chapple C: Exploiting natural variation of secondary metabolism identifies a gene controlling the glycosylation diversity of dihydroxybenzoic acids in Arabidopsis thaliana. Genetics. 2014 Nov;198(3):1267-76. doi: 10.1534/genetics.114.168690. Epub 2014 Aug 29. [PubMed:25173843 ]
LOTUS database [Link]

Showing NP-Card for 2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid (NP0184953)

MOL for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

3D MOL for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

3D SDF for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

3D-SDF for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

PDB for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

3D PDB for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

SMILES for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

INCHI for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

Structure for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)

3D Structure for NP0184953 (2-hydroxy-5-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}benzoic acid)