NP-MRD: Showing NP-Card for 14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one (NP0184642)

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Record Information

Version

1.0

Created at

2022-09-03 23:49:07 UTC

Updated at

2022-09-03 23:49:07 UTC

NP-MRD ID

NP0184642

Secondary Accession Numbers

None

Natural Product Identification

Common Name

14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one

Description

14-Benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-2H,5H,6H,7H,8H,11H,12H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone. It was first documented in 2022 (PMID: 36057450). Based on a literature review a significant number of articles have been published on 14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-2H,5H,6H,7H,8H,11H,12H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one (PMID: 36057449) (PMID: 36057448) (PMID: 36057447) (PMID: 36057446).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042201492D          

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  Mrv1652309042201492D          

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 32 33  1  0  0  0  0
  2 33  1  0  0  0  0
 33 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0184642

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1C2C(CC3=CC=CC=C3)N=C(O)C22OC(=O)C=CC(C)(O)CC(C)CC=CC2C(O)C1=C

> <INCHI_IDENTIFIER>
InChI=1S/C28H35NO5/c1-17-9-8-12-21-25(31)19(3)18(2)24-22(15-20-10-6-5-7-11-20)29-26(32)28(21,24)34-23(30)13-14-27(4,33)16-17/h5-8,10-14,17-18,21-22,24-25,31,33H,3,9,15-16H2,1-2,4H3,(H,29,32)

> <INCHI_KEY>
LDMZOJRULITYER-UHFFFAOYSA-N

> <FORMULA>
C28H35NO5

> <MOLECULAR_WEIGHT>
465.59

> <EXACT_MASS>
465.251523231

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
50.78702914100462

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-2H,5H,6H,7H,8H,11H,12H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one

> <JCHEM_LOGP>
2.9124450440679586

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.074846371891756

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.9246402625687233

> <JCHEM_PKA_STRONGEST_BASIC>
4.817004212694702

> <JCHEM_POLAR_SURFACE_AREA>
99.35000000000001

> <JCHEM_REFRACTIVITY>
132.3749

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6H,7H,8H,11H,13H,13aH,14H,16bH-oxacyclododeca[3,2-e]isoindol-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.577  -4.858   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.121  -4.354   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.170  -2.842   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.995  -1.834   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.625  -2.338   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.224  -0.919   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.428   0.400   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.172   1.748   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.377   3.066   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.121   4.415   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.660   4.444   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.456   3.126   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.712   1.778   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       3.758  -1.050   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       3.716  -2.360   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.526  -3.149   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       2.789  -3.346   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.244  -2.842   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.535  -1.330   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       3.371  -0.321   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       5.990  -0.826   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.154  -1.834   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.863  -3.346   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.058  -2.375   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       8.403  -3.370   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       8.027  -4.354   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.736  -5.866   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.901  -6.874   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.281  -6.370   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.117  -5.362   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       3.662  -5.866   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.498  -4.858   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.043  -5.362   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       0.752  -6.874   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   33                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   17                                                  
CONECT    6    5    7   14                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    8                                                       
CONECT   14    6   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15    5   18   32                                             
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25   26                                             
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   23   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   17   33                                                  
CONECT   33   32    2   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₅NO₅

Average Mass

465.5900 Da

Monoisotopic Mass

465.25152 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC1C2C(CC3=CC=CC=C3)N=C(O)C22OC(=O)C=CC(C)(O)CC(C)CC=CC2C(O)C1=C

InChI Identifier

InChI=1S/C28H35NO5/c1-17-9-8-12-21-25(31)19(3)18(2)24-22(15-20-10-6-5-7-11-20)29-26(32)28(21,24)34-23(30)13-14-27(4,33)16-17/h5-8,10-14,17-18,21-22,24-25,31,33H,3,9,15-16H2,1-2,4H3,(H,29,32)

InChI Key

LDMZOJRULITYER-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isoindoles and derivatives

Sub Class

Isoindolines

Direct Parent

Isoindolones

Alternative Parents

Substituents

Isoindolone
Isoindole
Monocyclic benzene moiety
Pyrrolidone
2-pyrrolidone
Benzenoid
Cyclic alcohol
Pyrrolidine
Tertiary alcohol
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary carboxylic acid amide
Secondary alcohol
Carboxamide group
Carboxylic acid ester
Lactam
Lactone
Azacycle
Oxacycle
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organopnictogen compound
Organic oxygen compound
Alcohol
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Organooxygen compound
Carbonyl group
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163024407

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Micalizzi E, Vaudano AE, Ballerini A, Talami F, Giovannini G, Turchi G, Cioclu MC, Giunta L, Meletti S: Ictal Apnea: a prospective monocentric study in patients with epilepsy. Eur J Neurol. 2022 Sep 3. doi: 10.1111/ene.15547. [PubMed:36057450 ]
Jiang S, Guo P, Heo HY, Zhang Y, Wu J, Jin Y, Laterra J, Eberhart CG, Lim M, Blakeley JO: Radiomics analysis of amide proton transfer-weighted and structural MR images for treatment response assessment in malignant gliomas. NMR Biomed. 2022 Sep 3:e4824. doi: 10.1002/nbm.4824. [PubMed:36057449 ]
Agarwal K, Saikia P, Podder I: Metabolic syndrome and Dyslipidemia in xanthelasma palpebrarum and associated risk-factors- a case-control study. J Cosmet Dermatol. 2022 Sep 3. doi: 10.1111/jocd.15353. [PubMed:36057448 ]
Lebel V, Argiropoulos N, Robins S, Charbonneau L, Feeley N: Family-centred care and breastfeeding self-efficacy determined how ready mothers were for their infants to be discharged from a neonatal intensive care unit. Acta Paediatr. 2022 Sep 3. doi: 10.1111/apa.16538. [PubMed:36057447 ]
Park JI, Kim SJ, Kim YJ, Lee SJ: Protective role of Caesalpinia sappan extract and its main component brazilin against blue light-induced damage in human fibroblasts. J Cosmet Dermatol. 2022 Sep 3. doi: 10.1111/jocd.15354. [PubMed:36057446 ]
LOTUS database [Link]

Showing NP-Card for 14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one (NP0184642)

MOL for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

3D MOL for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

3D SDF for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

3D-SDF for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

PDB for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

3D PDB for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

SMILES for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

INCHI for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

Structure for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)

3D Structure for NP0184642 (14-benzyl-5,11,16-trihydroxy-5,7,13-trimethyl-12-methylidene-6h,7h,8h,10ah,11h,13h,13ah,14h-oxacyclododeca[2,3-d]isoindol-2-one)