NP-MRD: Showing NP-Card for (2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide (NP0184511)

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Record Information

Version

2.0

Created at

2022-09-03 23:39:49 UTC

Updated at

2022-09-03 23:39:50 UTC

NP-MRD ID

NP0184511

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide

Description

Hookerianamide D belongs to the class of organic compounds known as azasteroids and derivatives. These are steroid derivatives in which one carbon atom in the steroidal skeleton has been substituted with a nitrogen atom. (2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide is found in Sarcococca hookeriana. Based on a literature review very few articles have been published on Hookerianamide D.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042201392D          

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M  END

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M  END


  Mrv1652309042201392D          

 35 38  0  0  1  0            999 V2000
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    1.3705   -1.5571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2424   -0.6800    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0685    0.0841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2640   -1.3314    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0812   -1.2185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0195    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6708    0.6076    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9511   -0.2681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2314    0.5079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4829   -0.8988    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  6  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  1  0  0  0
 14 15  1  0  0  0  0
 16 15  1  6  0  0  0
 16 17  1  0  0  0  0
 11 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  2  0  0  0  0
 22 29  1  0  0  0  0
 29 30  1  0  0  0  0
 31 30  1  1  0  0  0
 16 31  1  0  0  0  0
 20 31  1  0  0  0  0
 13 32  1  0  0  0  0
  8 32  1  0  0  0  0
  2 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0184511

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C(\C)=C\C(=O)N(C)[C@H]1CC[C@@]2(C)[C@@H](CC[C@H]3[C@@H]4CC[C@H]([C@H](C)N(C)C=O)[C@@]4(C)CC[C@H]23)C1

> <INCHI_IDENTIFIER>
InChI=1S/C31H52N2O2/c1-20(2)21(3)17-29(35)33(8)24-13-15-30(5)23(18-24)9-10-25-27-12-11-26(22(4)32(7)19-34)31(27,6)16-14-28(25)30/h17,19-20,22-28H,9-16,18H2,1-8H3/b21-17+/t22-,23-,24-,25-,26+,27-,28-,30-,31+/m0/s1

> <INCHI_KEY>
CPJRFNTWCNFXBZ-ZYCIYFSJSA-N

> <FORMULA>
C31H52N2O2

> <MOLECULAR_WEIGHT>
484.769

> <EXACT_MASS>
484.402878922

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
87

> <JCHEM_AVERAGE_POLARIZABILITY>
59.76783642018974

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E)-N-[(1S,2S,5S,7S,10R,11S,14S,15S)-2,15-dimethyl-14-[(1S)-1-(N-methylformamido)ethyl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl]-N,3,4-trimethylpent-2-enamide

> <JCHEM_LOGP>
5.719897203

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
0.20952301132203355

> <JCHEM_POLAR_SURFACE_AREA>
40.620000000000005

> <JCHEM_REFRACTIVITY>
145.19310000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-N-[(1S,2S,5S,7S,10R,11S,14S,15S)-2,15-dimethyl-14-[(1S)-1-(N-methylformamido)ethyl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl]-N,3,4-trimethylpent-2-enamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0      16.536  -2.220   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      17.059  -0.771   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      16.067   0.406   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      14.551   0.135   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      14.028  -1.314   0.000  0.00  0.00           O+0
HETATM    6  N   UNK     0      13.558   1.312   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      14.081   2.761   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.042   1.041   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.519  -0.407   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.003  -0.678   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.010   0.499   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.487  -0.949   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.533   1.947   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.541   3.125   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.025   2.854   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.502   1.405   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.494   0.228   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.971  -1.221   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.455  -1.492   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.462  -0.314   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.791  -1.700   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.923  -0.264   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.978  -1.480   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.558  -2.907   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0       0.452  -1.269   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0      -0.128   0.157   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.493  -2.485   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -2.018  -2.275   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       2.495   1.215   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.770   2.079   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.986   1.134   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      11.049   2.218   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      18.575  -0.500   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      19.099   0.948   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      19.568  -1.678   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   33                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   32                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13   17                                             
CONECT   12   11                                                            
CONECT   13   11   14   32                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   31                                                  
CONECT   17   16   11   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22   31                                             
CONECT   21   20                                                            
CONECT   22   20   23   29                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27                                                            
CONECT   29   22   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   16   20                                                  
CONECT   32   13    8                                                       
CONECT   33    2   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₁H₅₂N₂O₂

Average Mass

484.7690 Da

Monoisotopic Mass

484.40288 Da

IUPAC Name

(2E)-N-[(1S,2S,5S,7S,10R,11S,14S,15S)-2,15-dimethyl-14-[(1S)-1-(N-methylformamido)ethyl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl]-N,3,4-trimethylpent-2-enamide

Traditional Name

(2E)-N-[(1S,2S,5S,7S,10R,11S,14S,15S)-2,15-dimethyl-14-[(1S)-1-(N-methylformamido)ethyl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl]-N,3,4-trimethylpent-2-enamide

CAS Registry Number

Not Available

SMILES

CC(C)C(\C)=C\C(=O)N(C)[C@H]1CC[C@@]2(C)[C@@H](CC[C@H]3[C@@H]4CC[C@H]([C@H](C)N(C)C=O)[C@@]4(C)CC[C@H]23)C1

InChI Identifier

InChI=1S/C31H52N2O2/c1-20(2)21(3)17-29(35)33(8)24-13-15-30(5)23(18-24)9-10-25-27-12-11-26(22(4)32(7)19-34)31(27,6)16-14-28(25)30/h17,19-20,22-28H,9-16,18H2,1-8H3/b21-17+/t22-,23-,24-,25-,26+,27-,28-,30-,31+/m0/s1

InChI Key

CPJRFNTWCNFXBZ-ZYCIYFSJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sarcococca hookeriana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as azasteroids and derivatives. These are steroid derivatives in which one carbon atom in the steroidal skeleton has been substituted with a nitrogen atom.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Azasteroids and derivatives

Direct Parent

Azasteroids and derivatives

Alternative Parents

Substituents

22-azasteroid
Pregnane-skeleton
Pregnane-type alkaloid
Steroidal alkaloid
Azasteroid
Alkaloid or derivatives
N-acyl-amine
Tertiary carboxylic acid amide
Carboxamide group
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Organonitrogen compound
Carbonyl group
Organic oxygen compound
Organic nitrogen compound
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.72	ChemAxon
pKa (Strongest Basic)	0.21	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	40.62 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	145.19 m³·mol⁻¹	ChemAxon
Polarizability	59.77 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9388941

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11213879

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide (NP0184511)

MOL for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

3D MOL for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

3D SDF for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

3D-SDF for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

PDB for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

3D PDB for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

SMILES for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

INCHI for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

Structure for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)

3D Structure for NP0184511 ((2e)-n-[(1s,3as,3br,5as,7s,9as,9bs,11as)-9a,11a-dimethyl-1-[(1s)-1-(n-methylformamido)ethyl]-tetradecahydro-1h-cyclopenta[a]phenanthren-7-yl]-n,3,4-trimethylpent-2-enamide)