NP-MRD: Showing NP-Card for 1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one (NP0183465)

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Record Information

Version

2.0

Created at

2022-09-03 22:22:43 UTC

Updated at

2022-09-03 22:22:43 UTC

NP-MRD ID

NP0183465

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one

Description

14-[(2R)-2,6-dihydroxy-6-methyl-3-{[(3S,4R,5R,6R)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-4,5,11-trihydroxy-15-methyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-9-en-8-one belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core. Based on a literature review very few articles have been published on 14-[(2R)-2,6-dihydroxy-6-methyl-3-{[(3S,4R,5R,6R)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-4,5,11-trihydroxy-15-methyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-9-en-8-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309042200222D          

 45 49  0  0  1  0            999 V2000
    0.5236   -4.7021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3378   -4.5691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2383   -3.6793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.1102   -2.8023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0027   -3.6195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  3  4  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
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 42 43  1  6  0  0  0
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  3 44  1  0  0  0  0
 44 45  1  6  0  0  0
M  END

     RDKit          3D

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  6 50  1  0
  6 51  1  0
  7 52  1  0
  7 53  1  0
  9 54  1  0
  9 55  1  0
  9 56  1  0
 10 57  1  0
 10 58  1  0
 10 59  1  0
 11 60  1  0
 13 61  1  0
 13 62  1  0
 13 63  1  0
 14 64  1  0
 15 65  1  6
 16 66  1  0
 16 67  1  0
 17 68  1  0
 17 69  1  0
 19 70  1  0
 21 71  1  0
 24 72  1  1
 25 73  1  0
 25 74  1  0
 26 75  1  6
 27 76  1  0
 28 77  1  1
 29 78  1  0
 30 79  1  0
 30 80  1  0
 31 81  1  1
 32 82  1  1
 33 83  1  0
 33 84  1  0
 34 85  1  0
 34 86  1  0
 36 87  1  0
 36 88  1  0
 36 89  1  0
M  END


  Mrv1652309042200222D          

 45 49  0  0  1  0            999 V2000
    0.5236   -4.7021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3378   -4.5691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8601   -5.2077    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3665   -4.5563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0556   -3.7922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2383   -3.6793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9274   -2.9151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1102   -2.8023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0027   -3.6195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7071   -2.6894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2230   -1.9850    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5619   -3.1408    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9106   -2.6345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2132   -3.6472    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0683   -2.4895    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8390   -1.6970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5218   -1.2340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1731   -1.7404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3708   -0.9394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853   -1.5952    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2655   -0.8192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0777   -0.6740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3580    0.1019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6095   -1.3047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4216   -1.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9534   -1.7902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7655   -1.6450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6731   -2.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2049   -3.1969    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8610   -2.7114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3292   -2.0807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5171   -2.2259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2368   -3.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4247   -3.1470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8928   -2.5163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5330   -3.2587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1213   -5.5748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9477   -6.3813    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4700   -7.0199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2949   -7.0097    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6621   -7.7485    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8013   -6.3584    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6078   -6.5320    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6078   -5.5564    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2464   -5.0341    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
  8 11  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  1  6  0  0  0
 12 14  1  6  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 24 31  1  0  0  0  0
 31 32  1  0  0  0  0
 20 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 15 35  1  0  0  0  0
 18 35  1  0  0  0  0
 35 36  1  0  0  0  0
  3 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  6  0  0  0
 40 42  1  0  0  0  0
 42 43  1  6  0  0  0
 42 44  1  0  0  0  0
  3 44  1  0  0  0  0
 44 45  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0183465

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@]1(COC[C@@H](O)[C@@H](O)[C@H]1O)OC(CCC(C)(C)O)[C@](C)(O)C1CCC2(O)C3=CC(=O)C4CC(O)C(O)CC4C3CCC12C

> <INCHI_IDENTIFIER>
InChI=1S/C33H54O12/c1-29(2,40)9-8-26(45-33(43-5)16-44-15-24(37)27(38)28(33)39)31(4,41)25-7-11-32(42)20-14-21(34)19-13-23(36)22(35)12-18(19)17(20)6-10-30(25,32)3/h14,17-19,22-28,35-42H,6-13,15-16H2,1-5H3/t17?,18?,19?,22?,23?,24-,25?,26?,27-,28-,30?,31-,32?,33+/m1/s1

> <INCHI_KEY>
IEBKSEMYCSZHEA-ZMCLFYFXSA-N

> <FORMULA>
C33H54O12

> <MOLECULAR_WEIGHT>
642.783

> <EXACT_MASS>
642.361527179

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
99

> <JCHEM_AVERAGE_POLARIZABILITY>
68.55962618961122

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
14-[(2R)-2,6-dihydroxy-6-methyl-3-{[(3S,4R,5R,6R)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-4,5,11-trihydroxy-15-methyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-8-one

> <JCHEM_LOGP>
-0.6433541573333348

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.071130389034249

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.063220576510322

> <JCHEM_PKA_STRONGEST_BASIC>
-2.627430643093576

> <JCHEM_POLAR_SURFACE_AREA>
206.59999999999997

> <JCHEM_REFRACTIVITY>
162.00259999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
14-[(2R)-2,6-dihydroxy-6-methyl-3-{[(3S,4R,5R,6R)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-4,5,11-trihydroxy-15-methyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-8-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       0.977  -8.777   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       2.497  -8.529   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       3.472  -9.721   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       4.417  -8.505   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.837  -7.079   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.312  -6.868   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.731  -5.442   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.206  -5.231   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.005  -6.756   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.320  -5.020   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.416  -3.705   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.782  -5.863   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.566  -4.918   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.998  -6.808   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       5.727  -4.647   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.299  -3.168   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.574  -2.304   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.790  -3.249   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.159  -1.754   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       9.306  -2.978   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.829  -1.529   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.345  -1.258   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      11.868   0.190   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      12.338  -2.436   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      13.854  -2.164   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      14.846  -3.342   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      16.362  -3.071   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      14.323  -4.790   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      15.316  -5.967   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      12.807  -5.061   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      11.814  -3.884   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      10.299  -4.155   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       9.775  -5.603   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.259  -5.874   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       7.267  -4.697   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       6.595  -6.083   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.093 -10.406   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       1.769 -11.912   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       2.744 -13.104   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       4.284 -13.085   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0       4.969 -14.464   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0       5.229 -11.869   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0       6.735 -12.193   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0       4.868 -10.372   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0       6.060  -9.397   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   37   44                                             
CONECT    4    3    5                                                       
CONECT    5    4    6   12                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8                                                            
CONECT   12    5   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12   16   35                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20   35                                             
CONECT   19   18                                                            
CONECT   20   18   21   32                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   31                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   24   32                                                  
CONECT   32   31   20   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   15   18   36                                             
CONECT   36   35                                                            
CONECT   37    3   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42    3   45                                                  
CONECT   45   44                                                            
MASTER        0    0    0    0    0    0    0    0   45    0   98    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₃H₅₄O₁₂

Average Mass

642.7830 Da

Monoisotopic Mass

642.36153 Da

IUPAC Name

14-[(2R)-2,6-dihydroxy-6-methyl-3-{[(3S,4R,5R,6R)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-4,5,11-trihydroxy-15-methyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-8-one

Traditional Name

14-[(2R)-2,6-dihydroxy-6-methyl-3-{[(3S,4R,5R,6R)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-4,5,11-trihydroxy-15-methyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-8-one

CAS Registry Number

Not Available

SMILES

CO[C@@]1(COC[C@@H](O)[C@@H](O)[C@H]1O)OC(CCC(C)(C)O)[C@](C)(O)C1CCC2(O)C3=CC(=O)C4CC(O)C(O)CC4C3CCC12C

InChI Identifier

InChI=1S/C33H54O12/c1-29(2,40)9-8-26(45-33(43-5)16-44-15-24(37)27(38)28(33)39)31(4,41)25-7-11-32(42)20-14-21(34)19-13-23(36)22(35)12-18(19)17(20)6-10-30(25,32)3/h14,17-19,22-28,35-42H,6-13,15-16H2,1-5H3/t17?,18?,19?,22?,23?,24-,25?,26?,27-,28-,30?,31-,32?,33+/m1/s1

InChI Key

IEBKSEMYCSZHEA-ZMCLFYFXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Cholestane steroids

Direct Parent

Cholesterols and derivatives

Alternative Parents

Substituents

Cholesterol-skeleton
25-hydroxysteroid
20-hydroxysteroid
6-oxosteroid
Oxosteroid
Hydroxysteroid
14-hydroxysteroid
2-hydroxysteroid
3-hydroxysteroid
3-hydroxy-delta-7-steroid
Delta-7-steroid
Ketal
Cyclohexenone
Oxepane
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Ketone
Oxacycle
Organoheterocyclic compound
Polyol
Ether
Dialkyl ether
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.64	ChemAxon
pKa (Strongest Acidic)	12.06	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	206.6 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	162 m³·mol⁻¹	ChemAxon
Polarizability	68.56 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163028301

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one (NP0183465)

MOL for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

3D MOL for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

3D SDF for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

3D-SDF for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

PDB for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

3D PDB for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

SMILES for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

INCHI for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

Structure for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)

3D Structure for NP0183465 (1-[(2r)-2,6-dihydroxy-6-methyl-3-{[(3s,4r,5r,6r)-4,5,6-trihydroxy-3-methoxyoxepan-3-yl]oxy}heptan-2-yl]-3a,7,8-trihydroxy-11a-methyl-1h,2h,3h,5ah,6h,7h,8h,9h,9ah,9bh,10h,11h-cyclopenta[a]phenanthren-5-one)