NP-MRD: Showing NP-Card for (3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol (NP0183078)

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Record Information

Version

2.0

Created at

2022-09-03 21:55:18 UTC

Updated at

2022-09-03 21:55:18 UTC

NP-MRD ID

NP0183078

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol

Description

Piperafizine B belongs to the class of organic compounds known as pyrazines. Pyrazines are compounds containing a pyrazine ring, which is a six-member aromatic heterocycle, that consists of two nitrogen atoms (at positions 1 and 4) and four carbon atoms. (3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol is found in Streptomyces thioluteus. Based on a literature review very few articles have been published on Piperafizine B.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 38  0  0  0  0  0  0  0  0999 V2000
    0.0302    1.9097    1.9674 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0559    0.9424    0.9700 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2107    0.4074    0.5341 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1692   -0.5262   -0.4353 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3397   -1.0286   -0.8360 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5965   -0.5985   -0.2638 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8799    0.7268   -0.0252 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0891    1.0971    0.5213 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0435    0.1576    0.8428 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7576   -1.1595    0.6039 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5543   -1.5309    0.0597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0339   -0.9474   -0.9928 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0345   -1.9132   -1.9913 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1838   -0.3856   -0.5287 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1471    0.5418    0.4337 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2892    1.0573    0.8508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5629    0.6440    0.2943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3555    1.5862   -0.3034 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5902    1.2773   -0.8620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0312   -0.0273   -0.8112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2440   -1.0046   -0.2088 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0149   -0.6550    0.3385 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5435    1.7854    2.7880 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2726   -1.7848   -1.6245 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1594    1.5228   -0.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2771    2.1545    0.6955 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0032    0.4362    1.2752 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4805   -1.9338    0.8418 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3826   -2.5972   -0.1083 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2803   -2.8576   -1.8689 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2948    1.8231    1.6420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0266    2.6074   -0.3515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2262    2.0081   -1.3364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9830   -0.3275   -1.2287 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6240   -2.0118   -0.1894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3970   -1.3959    0.8059 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
  4 12  1  0
 12 13  1  0
 12 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 15  2  1  0
 22 17  1  0
 11  6  1  0
  1 23  1  0
  5 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
 10 28  1  0
 11 29  1  0
 13 30  1  0
 16 31  1  0
 18 32  1  0
 19 33  1  0
 20 34  1  0
 21 35  1  0
 22 36  1  0
M  END


  Mrv1652309032223552D          

 22 24  0  0  0  0            999 V2000
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  6 11  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
  2 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 17 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0183078

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=N/C(=C\C2=CC=CC=C2)/C(O)=N\C\1=C/C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H14N2O2/c21-17-15(11-13-7-3-1-4-8-13)19-18(22)16(20-17)12-14-9-5-2-6-10-14/h1-12H,(H,19,22)(H,20,21)/b15-11-,16-12-

> <INCHI_KEY>
RFSUEJIDSYCCLL-NFLUSIDLSA-N

> <FORMULA>
C18H14N2O2

> <MOLECULAR_WEIGHT>
290.322

> <EXACT_MASS>
290.105527699

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
31.563905536908386

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3Z,6Z)-bis(phenylmethylidene)-3,6-dihydropyrazine-2,5-diol

> <JCHEM_LOGP>
4.227754890666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.898355603084434

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.4432995172195575

> <JCHEM_PKA_STRONGEST_BASIC>
-1.574005745874874

> <JCHEM_POLAR_SURFACE_AREA>
65.18

> <JCHEM_REFRACTIVITY>
88.01320000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3Z,6Z)-bis(phenylmethylidene)pyrazine-2,5-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       0.000  -3.080   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.334  -6.930   0.000  0.00  0.00           O+0
HETATM   14  N   UNK     0      -2.667  -4.620   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -6.668  -2.310   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   15                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   12                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    6                                                       
CONECT   12    4   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14    2   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   17                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Value	Source
3,6-Dibenzylidene-2,5-dioxopiperazine	MeSH

Chemical Formula

C₁₈H₁₄N₂O₂

Average Mass

290.3220 Da

Monoisotopic Mass

290.10553 Da

IUPAC Name

(3Z,6Z)-bis(phenylmethylidene)-3,6-dihydropyrazine-2,5-diol

Traditional Name

(3Z,6Z)-bis(phenylmethylidene)pyrazine-2,5-diol

CAS Registry Number

Not Available

SMILES

OC1=N/C(=C\C2=CC=CC=C2)/C(O)=N\C\1=C/C1=CC=CC=C1

InChI Identifier

InChI=1S/C18H14N2O2/c21-17-15(11-13-7-3-1-4-8-13)19-18(22)16(20-17)12-14-9-5-2-6-10-14/h1-12H,(H,19,22)(H,20,21)/b15-11-,16-12-

InChI Key

RFSUEJIDSYCCLL-NFLUSIDLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces thioluteus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrazines. Pyrazines are compounds containing a pyrazine ring, which is a six-member aromatic heterocycle, that consists of two nitrogen atoms (at positions 1 and 4) and four carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Diazines

Sub Class

Pyrazines

Direct Parent

Pyrazines

Alternative Parents

Substituents

Benzenoid
Pyrazine
Monocyclic benzene moiety
Heteroaromatic compound
Lactam
Azacycle
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.23	ChemAxon
pKa (Strongest Acidic)	5.44	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	65.18 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	88.01 m³·mol⁻¹	ChemAxon
Polarizability	31.56 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00017023

Chemspider ID

4576164

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5463495

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol (NP0183078)

MOL for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

3D MOL for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

3D SDF for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

3D-SDF for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

PDB for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

3D PDB for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

SMILES for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

INCHI for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

Structure for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)

3D Structure for NP0183078 ((3z,6z)-bis(phenylmethylidene)pyrazine-2,5-diol)