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Record Information
Version2.0
Created at2022-09-03 21:44:32 UTC
Updated at2022-09-03 21:44:32 UTC
NP-MRD IDNP0182923
Secondary Accession NumbersNone
Natural Product Identification
Common Name[(2r)-1-{6,12,17,23-tetrabromo-7,11,13,16,18,22-hexahydroxy-9,20-dioxo-24-[(2r)-2-(sulfooxy)pentyl]octacyclo[13.11.1.1²,¹⁰.0³,⁸.0⁴,²⁵.0¹⁹,²⁷.0²¹,²⁶.0¹⁴,²⁸]octacosa-1,3,5,7,10(28),11,13,15(27),16,18,21(26),22,24-tridecaen-5-yl}pentan-2-yl]oxysulfonic acid
DescriptionGymnochrome D belongs to the class of organic compounds known as benzopyrenes. These are organic compounds containing a benzene fused to a pyrene(benzo[def]phenanthrene) ring system. [(2r)-1-{6,12,17,23-tetrabromo-7,11,13,16,18,22-hexahydroxy-9,20-dioxo-24-[(2r)-2-(sulfooxy)pentyl]octacyclo[13.11.1.1²,¹⁰.0³,⁸.0⁴,²⁵.0¹⁹,²⁷.0²¹,²⁶.0¹⁴,²⁸]octacosa-1,3,5,7,10(28),11,13,15(27),16,18,21(26),22,24-tridecaen-5-yl}pentan-2-yl]oxysulfonic acid is found in Neogymnocrinus richeri. Based on a literature review very few articles have been published on Gymnochrome D.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC38H28Br4O16S2
Average Mass1124.3600 Da
Monoisotopic Mass1119.75523 Da
IUPAC Name{[(2R)-1-{6,12,17,23-tetrabromo-7,11,13,16,18,22-hexahydroxy-9,20-dioxo-24-[(2R)-2-(sulfooxy)pentyl]octacyclo[13.11.1.1^{2,10}.0^{3,8}.0^{4,25}.0^{19,27}.0^{21,26}.0^{14,28}]octacosa-1(27),2(28),3,5,7,10,12,14,16,18,21,23,25-tridecaen-5-yl}pentan-2-yl]oxy}sulfonic acid
Traditional Name[(2R)-1-{6,12,17,23-tetrabromo-7,11,13,16,18,22-hexahydroxy-9,20-dioxo-24-[(2R)-2-(sulfooxy)pentyl]octacyclo[13.11.1.1^{2,10}.0^{3,8}.0^{4,25}.0^{19,27}.0^{21,26}.0^{14,28}]octacosa-1(27),2(28),3,5,7,10,12,14,16,18,21,23,25-tridecaen-5-yl}pentan-2-yl]oxysulfonic acid
CAS Registry NumberNot Available
SMILES
CCC[C@H](CC1=C(Br)C(O)=C2C(=O)C3=C(O)C(Br)=C(O)C4=C5C(O)=C(Br)C(O)=C6C(=O)C7=C(O)C(Br)=C(C[C@@H](CCC)OS(O)(=O)=O)C8=C7C(=C56)C(=C34)C2=C18)OS(O)(=O)=O
InChI Identifier
InChI=1S/C38H28Br4O16S2/c1-3-5-9(57-59(51,52)53)7-11-13-14-12(8-10(6-4-2)58-60(54,55)56)28(40)36(48)24-16(14)18-17-15(13)23(35(47)27(11)39)31(43)25-19(17)21(33(45)29(41)37(25)49)22-20(18)26(32(24)44)38(50)30(42)34(22)46/h9-10,45-50H,3-8H2,1-2H3,(H,51,52,53)(H,54,55,56)/t9-,10-/m1/s1
InChI KeyYNGACHBZHKWDLZ-NXEZZACHSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Neogymnocrinus richeriLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as benzopyrenes. These are organic compounds containing a benzene fused to a pyrene(benzo[def]phenanthrene) ring system.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPyrenes
Sub ClassBenzopyrenes
Direct ParentBenzopyrenes
Alternative Parents
Substituents
  • Benzo-a-pyrene
  • Benzo-e-pyrene
  • Phenanthro-perylenequinone
  • Perylenequinone
  • Chrysene
  • Triphenylene
  • Phenanthrol
  • Polybrominated biphenyl
  • Anthracene
  • Phenanthrene
  • 2-naphthol
  • 1-naphthol
  • 2-halophenol
  • 2-bromophenol
  • Phenol
  • Sulfuric acid monoester
  • Sulfate-ester
  • Alkyl sulfate
  • Aryl halide
  • Aryl bromide
  • Sulfuric acid ester
  • Organic sulfuric acid or derivatives
  • Vinylogous acid
  • Polyol
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organobromide
  • Organohalogen compound
  • Organic oxide
  • Organic oxygen compound
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP11.67ChemAxon
pKa (Strongest Acidic)-2.3ChemAxon
pKa (Strongest Basic)-6.4ChemAxon
Physiological Charge-6ChemAxon
Hydrogen Acceptor Count14ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area282.72 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity229.93 m³·mol⁻¹ChemAxon
Polarizability93.25 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID10474037
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15101870
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]