NP-MRD: Showing NP-Card for methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate (NP0182842)

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Record Information

Version

2.0

Created at

2022-09-03 21:39:00 UTC

Updated at

2022-09-03 21:39:00 UTC

NP-MRD ID

NP0182842

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate

Description

Rhazimal belongs to the class of organic compounds known as corynanthean-type alkaloids. These are alkaloids with a structure based on the corynanthean nucleus, which is a tetracycle characterized by an indole fused to a quinolizidine. Additionally, the quinolizidine ring system is substituted to a 2-methylpropyl group and one ethyl group. methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate is found in Rhazya stricta. methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate was first documented in 2019 (PMID: 30803132). Based on a literature review very few articles have been published on Rhazimal.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032223392D          

 26 30  0  0  1  0            999 V2000
   -1.9077    0.7429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4736    1.4444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6490    1.4193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1878    0.6029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7241    0.4340    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9433    0.6394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1539    1.2979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4617    1.7726    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0659    1.0487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6321    0.4487    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3778    0.8017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1391    0.4838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7950    0.9841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6897    1.8024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9284    2.1203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2724    1.6199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4887    1.1289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3712    2.0571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1624    2.1700    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8276    2.4625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6424    3.2664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1464    3.5080    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4000    3.0566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2007    2.8580    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1716    3.8494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7440    4.4435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
  8 16  1  0  0  0  0
 17  9  1  6  0  0  0
  5 17  1  0  0  0  0
 17 18  1  0  0  0  0
 19 18  1  6  0  0  0
  3 19  1  0  0  0  0
 19 20  1  0  0  0  0
  8 20  1  0  0  0  0
 20 21  1  1  0  0  0
 21 22  2  0  0  0  0
 20 23  1  6  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END

     RDKit          3D

 48 52  0  0  0  0  0  0  0  0999 V2000
    4.5043    0.9749   -1.4691 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3713    1.0734   -0.5010 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5991    0.0556   -0.2096 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7881   -1.2807   -0.8155 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5169   -1.9402   -0.7877 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6719   -1.7086   -1.8889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4524   -0.7959   -1.7357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7264   -0.4742   -0.2478 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.5109   -1.7414    0.4020 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5870   -2.2800    0.7635 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6513   -1.3870    0.4727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0391   -1.4847    0.7084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9019   -0.4610    0.3828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3486    0.6710   -0.1871 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0026    0.7988   -0.4312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1652   -0.2431   -0.0952 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9401   -2.1696    0.4560 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4433   -1.1258    1.4734 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4843    0.1925    0.7566 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1854    0.6340    0.1254 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5340    1.4187   -1.0909 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0044    2.4808   -1.3901 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4728    1.6020    1.0249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6143    2.7870    0.6642 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9583    1.2632    2.2853 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5854    2.2688    3.0949 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8426   -0.0776   -1.5317 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2118    1.3820   -2.4660 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3311    1.5898   -1.0967 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1658    2.0257   -0.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5079   -1.9042   -0.2349 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1663   -1.2547   -1.8481 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3298   -2.7184   -2.2686 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3196   -1.3355   -2.7387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4045   -1.2984   -2.0950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4188    0.1361   -2.3283 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4458   -2.3761    1.1532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9722   -0.5474    0.5695 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9824    1.5176   -0.4667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6262    1.7275   -0.8879 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0173   -3.1850    0.8671 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7667   -1.0907    2.3501 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4577   -1.3788    1.7791 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7604    0.9430    1.5616 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2955    1.1010   -1.8128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8462    2.8409    3.6618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3945    1.8297    3.7214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1089    2.9449    2.3593 H   0  0  0  0  0  0  0  0  0  0  0  0
 26 25  1  0
 25 23  1  0
 23 24  2  0
 20 23  1  1
 20 21  1  0
 21 22  2  0
 20 19  1  0
 19 18  1  0
 18 17  1  0
 17  5  1  0
  5  6  1  0
  6  7  1  0
  8  7  1  6
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
  5  4  1  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  8 20  1  0
 16  8  1  0
  3 19  1  0
  9 17  1  0
 16 11  1  0
 26 46  1  0
 26 47  1  0
 26 48  1  0
 21 45  1  0
 19 44  1  1
 18 42  1  0
 18 43  1  0
 17 41  1  1
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
 12 37  1  0
 13 38  1  0
 14 39  1  0
 15 40  1  0
  4 31  1  0
  4 32  1  0
  2 30  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
M  END


  Mrv1652309032223392D          

 26 30  0  0  1  0            999 V2000
   -1.9077    0.7429    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4736    1.4444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6490    1.4193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1878    0.6029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7241    0.4340    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9433    0.6394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1539    1.2979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4617    1.7726    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0659    1.0487    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6321    0.4487    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3778    0.8017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1391    0.4838    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7950    0.9841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6897    1.8024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9284    2.1203    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2724    1.6199    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4887    1.1289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3712    2.0571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1624    2.1700    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8276    2.4625    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6424    3.2664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1464    3.5080    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4000    3.0566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2007    2.8580    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1716    3.8494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7440    4.4435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
  8 16  1  0  0  0  0
 17  9  1  6  0  0  0
  5 17  1  0  0  0  0
 17 18  1  0  0  0  0
 19 18  1  6  0  0  0
  3 19  1  0  0  0  0
 19 20  1  0  0  0  0
  8 20  1  0  0  0  0
 20 21  1  1  0  0  0
 21 22  2  0  0  0  0
 20 23  1  6  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0182842

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)[C@@]1(C=O)[C@H]2C[C@@H]3N(CC[C@@]11C3=NC3=CC=CC=C13)C\C2=C/C

> <INCHI_IDENTIFIER>
InChI=1S/C21H22N2O3/c1-3-13-11-23-9-8-20-14-6-4-5-7-16(14)22-18(20)17(23)10-15(13)21(20,12-24)19(25)26-2/h3-7,12,15,17H,8-11H2,1-2H3/b13-3+/t15-,17-,20+,21+/m0/s1

> <INCHI_KEY>
NOKTUSVPNZHPFL-ICUSHYPNSA-N

> <FORMULA>
C21H22N2O3

> <MOLECULAR_WEIGHT>
350.418

> <EXACT_MASS>
350.163042576

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
37.04007613899671

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1S,10S,12S,13Z,18S)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0^{1,9}.0^{2,7}.0^{10,15}]octadeca-2,4,6,8-tetraene-18-carboxylate

> <JCHEM_LOGP>
2.5267904716666663

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
6.333921390393679

> <JCHEM_POLAR_SURFACE_AREA>
58.97

> <JCHEM_REFRACTIVITY>
100.5573

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1S,10S,12S,13Z,18S)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0^{1,9}.0^{2,7}.0^{10,15}]octadeca-2,4,6,8-tetraene-18-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      -3.561   1.387   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.751   2.696   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.211   2.649   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.351   1.125   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0       1.352   0.810   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0       3.627   1.194   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.021   2.423   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.728   3.309   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.990   1.958   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       3.047   0.837   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       4.439   1.496   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.860   0.903   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.084   1.837   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.887   3.364   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.466   3.958   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.242   3.024   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.912   2.107   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.693   3.840   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.303   4.051   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.545   4.597   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.199   6.097   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.273   6.548   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       2.613   5.706   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       4.108   5.335   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       2.187   7.186   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       3.255   8.295   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   19                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   17                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   16   20                                             
CONECT    9    8   10   17                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11    8                                                  
CONECT   17    9    5   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18    3   20                                                  
CONECT   20   19    8   21   23                                             
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   20   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₂N₂O₃

Average Mass

350.4180 Da

Monoisotopic Mass

350.16304 Da

IUPAC Name

methyl (1S,10S,12S,13Z,18S)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0^{1,9}.0^{2,7}.0^{10,15}]octadeca-2,4,6,8-tetraene-18-carboxylate

Traditional Name

methyl (1S,10S,12S,13Z,18S)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0^{1,9}.0^{2,7}.0^{10,15}]octadeca-2,4,6,8-tetraene-18-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)[C@@]1(C=O)[C@H]2C[C@@H]3N(CC[C@@]11C3=NC3=CC=CC=C13)C\C2=C/C

InChI Identifier

InChI=1S/C21H22N2O3/c1-3-13-11-23-9-8-20-14-6-4-5-7-16(14)22-18(20)17(23)10-15(13)21(20,12-24)19(25)26-2/h3-7,12,15,17H,8-11H2,1-2H3/b13-3+/t15-,17-,20+,21+/m0/s1

InChI Key

NOKTUSVPNZHPFL-ICUSHYPNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rhazya stricta	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as corynanthean-type alkaloids. These are alkaloids with a structure based on the corynanthean nucleus, which is a tetracycle characterized by an indole fused to a quinolizidine. Additionally, the quinolizidine ring system is substituted to a 2-methylpropyl group and one ethyl group.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Corynanthean-type alkaloids

Sub Class

Not Available

Direct Parent

Corynanthean-type alkaloids

Alternative Parents

Substituents

Corynanthean skeleton
Akuammilan skeleton
Quinolizidine
3-alkylindole
Indole or derivatives
Aralkylamine
Piperidine
Benzenoid
Methyl ester
Amino acid or derivatives
Carboxylic acid ester
Ketimine
Tertiary amine
Tertiary aliphatic amine
Azacycle
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Imine
Organic oxygen compound
Aldehyde
Amine
Carbonyl group
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.53	ChemAxon
pKa (Strongest Basic)	6.33	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	58.97 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	100.56 m³·mol⁻¹	ChemAxon
Polarizability	37.04 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101967159

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zhang X, Kakde BN, Guo R, Yadav S, Gu Y, Li A: Total Syntheses of Echitamine, Akuammiline, Rhazicine, and Pseudoakuammigine. Angew Chem Int Ed Engl. 2019 Apr 23;58(18):6053-6058. doi: 10.1002/anie.201901086. Epub 2019 Mar 27. [PubMed:30803132 ]
LOTUS database [Link]

Showing NP-Card for methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate (NP0182842)

MOL for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

3D MOL for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

3D SDF for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

3D-SDF for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

PDB for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

3D PDB for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

SMILES for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

INCHI for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

Structure for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)

3D Structure for NP0182842 (methyl (1s,10s,12s,13z,18s)-13-ethylidene-18-formyl-8,15-diazapentacyclo[10.5.1.0¹,⁹.0²,⁷.0¹⁰,¹⁵]octadeca-2,4,6,8-tetraene-18-carboxylate)