NP-MRD: Showing NP-Card for 3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol (NP0182840)

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Record Information

Version

2.0

Created at

2022-09-03 21:38:53 UTC

Updated at

2022-09-03 21:38:53 UTC

NP-MRD ID

NP0182840

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol

Description

3-{[3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol belongs to the class of organic compounds known as pyranoflavonoids. Pyranoflavonoids are compounds containing a pyran ring fused to a 2-phenyl-1,4-benzopyran skeleton. 3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol is found in Lysidice brevicalyx. 3-{[3,4,5-Trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004241516572D          

 33 37  0  0  0  0            999 V2000
    0.2362   -0.0454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0463   -0.2014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3163   -0.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1265   -1.1368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3965   -1.9164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2066   -2.0723    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7467   -1.4486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4767   -0.6691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0168   -0.0454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269   -0.2014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3670    0.4223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0970    1.2018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1771    0.2664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7172    0.8900    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5274    0.7341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7974   -0.0454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6075   -0.2014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8776   -0.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6877   -1.1368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3375   -1.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6075   -2.3841    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5274   -1.4486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2573   -0.6691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4472   -0.5132    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9071   -1.1368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0970   -0.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5569   -1.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8564   -2.5400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1265   -3.3196    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0463   -2.3841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5062   -3.0077    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7762   -1.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0339   -1.4486    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 16 23  1  0  0  0  0
 23 24  1  0  0  0  0
 13 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 10 26  1  0  0  0  0
 26 27  2  0  0  0  0
  7 27  1  0  0  0  0
  5 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
  3 32  1  0  0  0  0
 32 33  1  0  0  0  0
M  END

     RDKit          3D

 57 61  0  0  0  0  0  0  0  0999 V2000
    6.8925    2.1742   -1.3100 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5833    1.6893   -1.3614 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6137    0.2130   -1.0610 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3596   -0.3657   -1.0876 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4703    0.1936   -0.1734 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3309   -0.5864   -0.1644 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0290   -0.2110   -0.4608 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6485    1.0606   -0.8288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6650    1.3742   -1.1121 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6795    0.4412   -1.0462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3133   -0.8382   -0.6786 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0019   -1.1494   -0.3956 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3120   -1.8185   -0.5987 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6285   -1.5671   -0.9623 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.4671   -1.1590    0.1887 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1510   -1.5865    1.4585 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9237   -1.2156    2.5508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6115   -1.6433    3.8387 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0105   -0.4061    2.2950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7956   -0.0249    3.3781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3260    0.0249    1.0013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5485   -0.3528   -0.0695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9130    0.1223   -1.4219 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0165   -0.2348   -2.3940 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7302   -0.4216   -1.9778 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0944    0.7984   -1.3564 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1631    1.8273   -2.3068 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0430    0.1881    1.2340 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1860   -0.4937    2.1286 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3816   -0.4623    1.3361 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.9531   -0.0662    2.5537 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3338   -0.0246    0.2461 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3179   -1.0067    0.1383 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9263    3.1522   -1.4657 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0316    2.2333   -0.5543 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1028    1.9139   -2.3143 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2126   -0.2771   -1.8561 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2614    1.2264   -0.4565 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4082    1.8397   -0.8976 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9667    2.3842   -1.4043 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2771   -2.1661   -0.1059 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1228   -2.4355   -1.4471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2882   -2.2275    1.6511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1651   -1.3808    4.6409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5980    0.5620    3.2565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1918    0.6629    0.8404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8886   -0.3876   -1.6739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1126    1.2021   -1.4602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1224   -0.7356   -2.8438 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5955    1.1038   -0.4381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8815    1.4609   -3.2003 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1115    1.2159    1.6226 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4188   -1.4534    2.0595 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2915   -1.5567    1.3172 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8298   -0.4778    2.7094 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8404    0.9096    0.5678 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4257   -1.2412   -0.8177 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 26  1  0
 26 27  1  0
 26 25  1  0
 25 24  1  0
 24 23  1  0
 23 22  1  0
 22 21  2  0
 21 19  1  0
 19 20  1  0
 19 17  2  0
 17 18  1  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  1  0
 13 11  1  0
 11 12  2  0
  5 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32  3  1  0
 12  7  1  0
 11 10  1  0
 14 25  1  0
 15 22  1  0
  1 34  1  0
  2 35  1  0
  2 36  1  0
  3 37  1  6
  5 38  1  6
  8 39  1  0
  9 40  1  0
 26 50  1  1
 27 51  1  0
 25 49  1  6
 23 47  1  0
 23 48  1  0
 21 46  1  0
 20 45  1  0
 18 44  1  0
 16 43  1  0
 14 42  1  6
 12 41  1  0
 28 52  1  1
 29 53  1  0
 30 54  1  1
 31 55  1  0
 32 56  1  1
 33 57  1  0
M  END


  Mrv1533004241516572D          

 33 37  0  0  0  0            999 V2000
    0.2362   -0.0454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0463   -0.2014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3163   -0.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1265   -1.1368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3965   -1.9164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2066   -2.0723    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7467   -1.4486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4767   -0.6691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0168   -0.0454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269   -0.2014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3670    0.4223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0970    1.2018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1771    0.2664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7172    0.8900    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5274    0.7341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7974   -0.0454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6075   -0.2014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8776   -0.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6877   -1.1368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3375   -1.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6075   -2.3841    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5274   -1.4486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2573   -0.6691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4472   -0.5132    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9071   -1.1368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0970   -0.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5569   -1.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8564   -2.5400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1265   -3.3196    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0463   -2.3841    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5062   -3.0077    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7762   -1.6046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0339   -1.4486    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 16 23  1  0  0  0  0
 23 24  1  0  0  0  0
 13 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 10 26  1  0  0  0  0
 26 27  2  0  0  0  0
  7 27  1  0  0  0  0
  5 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
  3 32  1  0  0  0  0
 32 33  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0182840

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCC1OC(OC2=CC=C3C(O)C4OCC5=CC(O)=C(O)C=C5C4OC3=C2)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C22H24O11/c23-6-15-17(27)18(28)19(29)22(33-15)31-9-1-2-10-14(4-9)32-20-11-5-13(25)12(24)3-8(11)7-30-21(20)16(10)26/h1-5,15-29H,6-7H2

> <INCHI_KEY>
GLOQXLMTMHDZPK-UHFFFAOYSA-N

> <FORMULA>
C22H24O11

> <MOLECULAR_WEIGHT>
464.423

> <EXACT_MASS>
464.131861593

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
44.83593716463847

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol

> <ALOGPS_LOGP>
-0.63

> <JCHEM_LOGP>
-0.6940380983333326

> <ALOGPS_LOGS>
-2.32

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.99947868430583

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.094147859047277

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810923437225645

> <JCHEM_POLAR_SURFACE_AREA>
178.53

> <JCHEM_REFRACTIVITY>
108.67650000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.23e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  O   UNK     0       0.441  -0.085   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.953  -0.376   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.457  -1.831   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.969  -2.122   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.473  -3.577   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.986  -3.868   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.994  -2.704   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.490  -1.249   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.498  -0.085   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.010  -0.376   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.018   0.788   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       9.514   2.243   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      11.531   0.497   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      12.539   1.661   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      14.051   1.370   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      14.555  -0.085   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      16.067  -0.376   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      16.571  -1.831   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      18.084  -2.122   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      15.563  -2.995   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      16.067  -4.450   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      14.051  -2.704   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      13.547  -1.249   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.035  -0.958   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      11.027  -2.122   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       9.514  -1.831   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.506  -2.995   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       3.465  -4.741   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       3.969  -6.197   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       1.953  -4.450   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       0.945  -5.614   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       1.449  -2.995   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -0.063  -2.704   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   32                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   28                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   27                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   26                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   24                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   23                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   16   24                                                  
CONECT   24   23   13   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   10   27                                                  
CONECT   27   26    7                                                       
CONECT   28    5   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30    3   33                                                  
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₂₄O₁₁

Average Mass

464.4230 Da

Monoisotopic Mass

464.13186 Da

IUPAC Name

3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol

Traditional Name

3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol

CAS Registry Number

Not Available

SMILES

OCC1OC(OC2=CC=C3C(O)C4OCC5=CC(O)=C(O)C=C5C4OC3=C2)C(O)C(O)C1O

InChI Identifier

InChI=1S/C22H24O11/c23-6-15-17(27)18(28)19(29)22(33-15)31-9-1-2-10-14(4-9)32-20-11-5-13(25)12(24)3-8(11)7-30-21(20)16(10)26/h1-5,15-29H,6-7H2

InChI Key

GLOQXLMTMHDZPK-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lysidice brevicalyx	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyranoflavonoids. Pyranoflavonoids are compounds containing a pyran ring fused to a 2-phenyl-1,4-benzopyran skeleton.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Pyranoflavonoids

Direct Parent

Pyranoflavonoids

Alternative Parents

Substituents

Pyranoflavonoid
Leucoanthocyanidin-skeleton
Phenolic glycoside
Hexose monosaccharide
O-glycosyl compound
Glycosyl compound
Chromane
Benzopyran
1-benzopyran
2-benzopyran
Isochromane
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Oxane
Monosaccharide
Benzenoid
Secondary alcohol
Acetal
Oxacycle
Organoheterocyclic compound
Dialkyl ether
Ether
Polyol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Alcohol
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.63	ALOGPS
logP	-0.69	ChemAxon
logS	-2.3	ALOGPS
pKa (Strongest Acidic)	9.09	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	178.53 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	108.68 m³·mol⁻¹	ChemAxon
Polarizability	44.84 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol (NP0182840)

MOL for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

3D MOL for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

3D SDF for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

3D-SDF for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

PDB for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

3D PDB for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

SMILES for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

INCHI for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

Structure for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)

3D Structure for NP0182840 (3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5a,10,11a,12-tetrahydro-5,11-dioxatetraphene-7,8,12-triol)