NP-MRD: Showing NP-Card for ent-copalyl diphosphate (NP0182333)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-03 20:59:41 UTC

Updated at

2022-09-03 20:59:41 UTC

NP-MRD ID

NP0182333

Secondary Accession Numbers

None

Natural Product Identification

Common Name

ent-copalyl diphosphate

Description

Ent-Copalyl diphosphate belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. ent-copalyl diphosphate is found in Streptomyces platensis. Ent-Copalyl diphosphate is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

  Mrv1652301112022522D          

 29 30  0  0  1  0            999 V2000
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3276    0.6320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3882    0.6320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -7.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -7.4250    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -8.1395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8414   -6.7105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  6  0  0  0
  2 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 26 29  2  0  0  0  0
M  END

     RDKit          3D

 65 66  0  0  0  0  0  0  0  0999 V2000
   -0.8547   -3.2463    0.1998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5509   -2.2384   -0.1639 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9753   -2.5260   -0.6987 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6518   -1.2191   -1.0439 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4432   -0.2827    0.0843 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4891    0.8191    0.1777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8857    1.3007   -1.2102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7415    0.1075    0.7417 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1552    1.9519    1.0680 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8091    2.0716    1.6355 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8987    0.8839    1.4704 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0706    0.2782    0.0932 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8330    1.4060   -0.8887 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1083   -0.8348   -0.1655 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2697   -0.6380   -1.3732 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0883   -1.2005   -1.4452 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9096   -0.4526   -0.3713 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2248   -1.0938    0.8866 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5770    0.6017   -0.8323 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7708    1.0825    0.0753 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6926    0.8690   -1.0002 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9306   -0.1333   -0.7913 P   0  0  2  0  0  5  0  0  0  0  0  0
    5.7065   -1.2292   -1.9439 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8868   -1.0401    0.6342 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4789    0.4013   -1.0789 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1664    0.9512    0.3906 P   0  0  0  0  0  5  0  0  0  0  0  0
    7.2129    0.5961    1.5166 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.6375    0.1947    0.6258 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3805    2.6063    0.2025 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4199   -4.2612    0.1193 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0850   -3.4019    0.6108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8999   -3.2303   -1.5620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4699   -2.9852    0.1824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7380   -1.4214   -1.1543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1813   -0.9001   -1.9899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5489   -0.8670    1.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9834    1.2222   -1.3846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4135    0.7343   -2.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6875    2.4090   -1.3216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4304   -0.7077    1.4231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3413   -0.2773   -0.0933 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3597    0.8515    1.2809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3775    2.9117    0.5028 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8870    2.0113    1.9314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8174    2.2932    2.7436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2348    2.9604    1.2332 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8288    1.2355    1.5373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0037    0.1409    2.2948 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4149    2.2899   -0.6579 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7640    1.7366   -0.7141 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0605    1.1360   -1.9209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3598   -0.7789    0.7052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2775    0.3462   -1.8819 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8234   -1.2738   -2.2294 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1301   -2.2885   -1.1908 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5238   -1.0819   -2.4263 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2584   -1.5637    0.7640 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3233   -0.3309    1.7212 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6114   -1.9175    1.2083 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3442    1.0873   -1.6942 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9902    0.3832    0.8518 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6787    2.1022    0.3359 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9613   -2.0034    0.3697 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0232    0.4389    1.4834 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4669    3.0133    0.1957 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
 17 16  1  0
 16 15  1  0
 15 14  1  0
 14  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  6
 17 19  2  0
 19 20  1  0
 20 21  1  0
 22 21  1  1
 22 24  1  0
 22 23  2  0
 22 25  1  0
 25 26  1  0
 26 28  1  0
 26 29  1  0
 26 27  2  0
 12 14  1  0
 12  5  1  0
 18 57  1  0
 18 58  1  0
 18 59  1  0
 16 55  1  0
 16 56  1  0
 15 53  1  0
 15 54  1  0
 14 52  1  1
  1 30  1  0
  1 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  1
  7 37  1  0
  7 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  8 42  1  0
  9 43  1  0
  9 44  1  0
 10 45  1  0
 10 46  1  0
 11 47  1  0
 11 48  1  0
 13 49  1  0
 13 50  1  0
 13 51  1  0
 19 60  1  0
 20 61  1  0
 20 62  1  0
 24 63  1  0
 28 64  1  0
 29 65  1  0
M  END

  Mrv1652301112022522D          

 29 30  0  0  1  0            999 V2000
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3276    0.6320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3882    0.6320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -7.0125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -7.4250    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -8.1395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8414   -6.7105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 17  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  6  0  0  0
  2 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 22 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 26 29  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0182333

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(CC[C@@H]1C(=C)CC[C@@H]2C(C)(C)CCC[C@@]12C)=C/COP(O)(=O)OP(O)(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H36O7P2/c1-15(11-14-26-29(24,25)27-28(21,22)23)7-9-17-16(2)8-10-18-19(3,4)12-6-13-20(17,18)5/h11,17-18H,2,6-10,12-14H2,1,3-5H3,(H,24,25)(H2,21,22,23)/b15-11+/t17-,18-,20+/m1/s1

> <INCHI_KEY>
JCAIWDXKLCEQEO-PGHZQYBFSA-N

> <FORMULA>
C20H36O7P2

> <MOLECULAR_WEIGHT>
450.4432

> <EXACT_MASS>
450.19362653

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
46.28633429373491

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[({[(2E)-5-[(1R,4aR,8aR)-5,5,8a-trimethyl-2-methylidene-decahydronaphthalen-1-yl]-3-methylpent-2-en-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid

> <ALOGPS_LOGP>
3.50

> <JCHEM_LOGP>
4.613945935999999

> <ALOGPS_LOGS>
-4.31

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.204340614405425

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.7672186921378312

> <JCHEM_POLAR_SURFACE_AREA>
113.29000000000002

> <JCHEM_REFRACTIVITY>
113.79959999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.22e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(-)-copalyl diphosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-JAN-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-JAN-20         0                                  
HETATM    1  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.345   1.180   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.325   1.180   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001  -3.850   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.000  -9.240   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.334 -10.010   0.000  0.00  0.00           O+0
HETATM   22  P   UNK     0       1.334 -11.550   0.000  0.00  0.00           P+0
HETATM   23  O   UNK     0      -0.206 -11.550   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0       2.874 -11.550   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       1.334 -13.090   0.000  0.00  0.00           O+0
HETATM   26  P   UNK     0       2.667 -13.860   0.000  0.00  0.00           P+0
HETATM   27  O   UNK     0       4.001 -14.630   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       1.897 -15.194   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       3.437 -12.526   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   17                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   17                                                  
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   11   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16    5   10   18                                             
CONECT   18   17                                                            
CONECT   19    2   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24   25                                             
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   22   26                                                       
CONECT   26   25   27   28   29                                             
CONECT   27   26                                                            
CONECT   28   26                                                            
CONECT   29   26                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   60    0
END

View in JSmol

Synonyms

Value	Source
(-)-Copalyl diphosphate	ChEBI
5alpha,9alpha,10beta-Labda-8(20),13-dien-15-yl diphosphate	ChEBI
(-)-Copalyl diphosphoric acid	Generator
5a,9a,10b-Labda-8(20),13-dien-15-yl diphosphate	Generator
5a,9a,10b-Labda-8(20),13-dien-15-yl diphosphoric acid	Generator
5alpha,9alpha,10beta-Labda-8(20),13-dien-15-yl diphosphoric acid	Generator
5Α,9α,10β-labda-8(20),13-dien-15-yl diphosphate	Generator
5Α,9α,10β-labda-8(20),13-dien-15-yl diphosphoric acid	Generator
ent-Copalyl diphosphoric acid	Generator

Chemical Formula

C₂₀H₃₆O₇P₂

Average Mass

450.4432 Da

Monoisotopic Mass

450.19363 Da

IUPAC Name

[({[(2E)-5-[(1R,4aR,8aR)-5,5,8a-trimethyl-2-methylidene-decahydronaphthalen-1-yl]-3-methylpent-2-en-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid

Traditional Name

(-)-copalyl diphosphate

CAS Registry Number

Not Available

SMILES

C\C(CC[C@@H]1C(=C)CC[C@@H]2C(C)(C)CCC[C@@]12C)=C/COP(O)(=O)OP(O)(O)=O

InChI Identifier

InChI=1S/C20H36O7P2/c1-15(11-14-26-29(24,25)27-28(21,22)23)7-9-17-16(2)8-10-18-19(3,4)12-6-13-20(17,18)5/h11,17-18H,2,6-10,12-14H2,1,3-5H3,(H,24,25)(H2,21,22,23)/b15-11+/t17-,18-,20+/m1/s1

InChI Key

JCAIWDXKLCEQEO-PGHZQYBFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces platensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Labdane diterpenoid
Organic pyrophosphate
Isoprenoid phosphate
Monoalkyl phosphate
Alkyl phosphate
Phosphoric acid ester
Organic phosphoric acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

copalyl diphosphate (CHEBI:28151 )
Labdane and halimane diterpenoids (C06089 )
Labdanes (C06089 )
Labdane and halimane diterpenoids (LMPR0104030001 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.5	ALOGPS
logP	4.61	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	1.77	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	113.8 m³·mol⁻¹	ChemAxon
Polarizability	46.29 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB001467

KNApSAcK ID

C00000880

Chemspider ID

Not Available

KEGG Compound ID

C06089

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5280897

PDB ID

Not Available

ChEBI ID

28151

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for ent-copalyl diphosphate (NP0182333)

MOL for NP0182333 (ent-copalyl diphosphate)

3D MOL for NP0182333 (ent-copalyl diphosphate)

3D SDF for NP0182333 (ent-copalyl diphosphate)

3D-SDF for NP0182333 (ent-copalyl diphosphate)

PDB for NP0182333 (ent-copalyl diphosphate)

3D PDB for NP0182333 (ent-copalyl diphosphate)

SMILES for NP0182333 (ent-copalyl diphosphate)

INCHI for NP0182333 (ent-copalyl diphosphate)

Structure for NP0182333 (ent-copalyl diphosphate)

3D Structure for NP0182333 (ent-copalyl diphosphate)