NP-MRD: Showing NP-Card for (1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate (NP0180669)

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Record Information

Version

2.0

Created at

2022-09-03 19:03:48 UTC

Updated at

2022-09-03 19:03:48 UTC

NP-MRD ID

NP0180669

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate

Description

(2E)-3-(1-Methyl-4-imidazolyl)acrylic acid (1R,8Z,11Z)-1beta-isopropyl-4,7-dimethyl-10-hydroxy-11-methyl-7beta,10beta-epoxy-1,2,4abeta,5,6,7,10,12abeta-octahydrobenzocyclodecene-6alpha-yl ester belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate is found in Erythropodium caribaeorum. Based on a literature review very few articles have been published on (2E)-3-(1-Methyl-4-imidazolyl)acrylic acid (1R,8Z,11Z)-1beta-isopropyl-4,7-dimethyl-10-hydroxy-11-methyl-7beta,10beta-epoxy-1,2,4abeta,5,6,7,10,12abeta-octahydrobenzocyclodecene-6alpha-yl ester.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032221032D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309032221032D          

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 33  2  1  6  0  0  0
  9 33  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0180669

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@H]1CC=C(C)[C@@H]2C[C@H](OC(=O)\C=C\C3=CN(C)C=N3)[C@@]3(C)O[C@](O)(C=C3)\C(C)=C/[C@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C27H36N2O4/c1-17(2)21-9-7-18(3)22-14-24(32-25(30)10-8-20-15-29(6)16-28-20)26(5)11-12-27(31,33-26)19(4)13-23(21)22/h7-8,10-13,15-17,21-24,31H,9,14H2,1-6H3/b10-8+,19-13-/t21-,22+,23-,24+,26+,27-/m1/s1

> <INCHI_KEY>
NQSCDPXIHHPPLC-MDNOMFLVSA-N

> <FORMULA>
C27H36N2O4

> <MOLECULAR_WEIGHT>
452.595

> <EXACT_MASS>
452.267507647

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
50.658790695549506

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,4R,8R,9S,10Z,12R)-12-hydroxy-1,5,11-trimethyl-8-(propan-2-yl)-15-oxatricyclo[10.2.1.0^{4,9}]pentadeca-5,10,13-trien-2-yl (2E)-3-(1-methyl-1H-imidazol-4-yl)prop-2-enoate

> <JCHEM_LOGP>
5.109436487666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.095095810787111

> <JCHEM_PKA_STRONGEST_BASIC>
5.946665423000477

> <JCHEM_POLAR_SURFACE_AREA>
73.58

> <JCHEM_REFRACTIVITY>
131.92499999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,4R,8R,9S,10Z,12R)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0^{4,9}]pentadeca-5,10,13-trien-2-yl (2E)-3-(1-methylimidazol-4-yl)prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.905  -1.246   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.370  -1.722   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.370  -3.262   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.834  -1.246   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.740  -2.492   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.740  -0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.740   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.834   2.786   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.740   4.032   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       3.330   0.770   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.370   3.262   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.370   4.802   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.036   5.572   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -0.298   4.802   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       1.036   7.112   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.298   7.882   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.298   9.422   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.543  10.327   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0      -1.068  11.792   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0      -1.973  13.037   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.472  11.792   0.000  0.00  0.00           C+0
HETATM   31  N   UNK     0       0.948  10.327   0.000  0.00  0.00           N+0
HETATM   32  C   UNK     0       0.905   2.786   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   33                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    9                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    5   10   33                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15   19                                             
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   20                                             
CONECT   18   17                                                            
CONECT   19   17   13                                                       
CONECT   20   17   21   32                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   26                                                       
CONECT   32   20   33                                                       
CONECT   33   32    2    9                                                  
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

View in JSmol

Synonyms

Value	Source
(2E)-3-(1-Methyl-4-imidazolyl)acrylate (1R,8Z,11Z)-1b-isopropyl-4,7-dimethyl-10-hydroxy-11-methyl-7b,10b-epoxy-1,2,4abeta,5,6,7,10,12abeta-octahydrobenzocyclodecene-6a-yl ester	Generator
(2E)-3-(1-Methyl-4-imidazolyl)acrylate (1R,8Z,11Z)-1beta-isopropyl-4,7-dimethyl-10-hydroxy-11-methyl-7beta,10beta-epoxy-1,2,4abeta,5,6,7,10,12abeta-octahydrobenzocyclodecene-6alpha-yl ester	Generator
(2E)-3-(1-Methyl-4-imidazolyl)acrylate (1R,8Z,11Z)-1β-isopropyl-4,7-dimethyl-10-hydroxy-11-methyl-7β,10β-epoxy-1,2,4abeta,5,6,7,10,12abeta-octahydrobenzocyclodecene-6α-yl ester	Generator
(2E)-3-(1-Methyl-4-imidazolyl)acrylic acid (1R,8Z,11Z)-1b-isopropyl-4,7-dimethyl-10-hydroxy-11-methyl-7b,10b-epoxy-1,2,4abeta,5,6,7,10,12abeta-octahydrobenzocyclodecene-6a-yl ester	Generator
(2E)-3-(1-Methyl-4-imidazolyl)acrylic acid (1R,8Z,11Z)-1β-isopropyl-4,7-dimethyl-10-hydroxy-11-methyl-7β,10β-epoxy-1,2,4abeta,5,6,7,10,12abeta-octahydrobenzocyclodecene-6α-yl ester	Generator

Chemical Formula

C₂₇H₃₆N₂O₄

Average Mass

452.5950 Da

Monoisotopic Mass

452.26751 Da

IUPAC Name

(1S,2S,4R,8R,9S,10Z,12R)-12-hydroxy-1,5,11-trimethyl-8-(propan-2-yl)-15-oxatricyclo[10.2.1.0^{4,9}]pentadeca-5,10,13-trien-2-yl (2E)-3-(1-methyl-1H-imidazol-4-yl)prop-2-enoate

Traditional Name

(1S,2S,4R,8R,9S,10Z,12R)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0^{4,9}]pentadeca-5,10,13-trien-2-yl (2E)-3-(1-methylimidazol-4-yl)prop-2-enoate

CAS Registry Number

Not Available

SMILES

CC(C)[C@H]1CC=C(C)[C@@H]2C[C@H](OC(=O)\C=C\C3=CN(C)C=N3)[C@@]3(C)O[C@](O)(C=C3)\C(C)=C/[C@H]12

InChI Identifier

InChI=1S/C27H36N2O4/c1-17(2)21-9-7-18(3)22-14-24(32-25(30)10-8-20-15-29(6)16-28-20)26(5)11-12-27(31,33-26)19(4)13-23(21)22/h7-8,10-13,15-17,21-24,31H,9,14H2,1-6H3/b10-8+,19-13-/t21-,22+,23-,24+,26+,27-/m1/s1

InChI Key

NQSCDPXIHHPPLC-MDNOMFLVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Erythropodium caribaeorum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Imidazolyl carboxylic acid derivative
Fatty acid ester
Fatty acyl
N-substituted imidazole
Azole
Dihydrofuran
Heteroaromatic compound
Imidazole
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Hemiacetal
Carboxylic acid derivative
Oxacycle
Azacycle
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Carbonyl group
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.11	ChemAxon
pKa (Strongest Acidic)	11.1	ChemAxon
pKa (Strongest Basic)	5.95	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	73.58 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	131.92 m³·mol⁻¹	ChemAxon
Polarizability	50.66 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15515759

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate (NP0180669)

MOL for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

3D MOL for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

3D SDF for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

3D-SDF for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

PDB for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

3D PDB for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

SMILES for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

INCHI for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

Structure for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)

3D Structure for NP0180669 ((1s,2s,4r,8r,9s,10z,12r)-12-hydroxy-8-isopropyl-1,5,11-trimethyl-15-oxatricyclo[10.2.1.0⁴,⁹]pentadeca-5,10,13-trien-2-yl (2e)-3-(1-methylimidazol-4-yl)prop-2-enoate)