NP-MRD: Showing NP-Card for [(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate (NP0180234)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-03 18:34:20 UTC

Updated at

2022-09-03 18:34:20 UTC

NP-MRD ID

NP0180234

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate

Description

(4S)-4alpha,5beta,6beta-Trihydroxy-6-(benzoyloxymethyl)-2-cyclohexene-1-one belongs to the class of organic compounds known as benzoic acid esters. These are ester derivatives of benzoic acid. [(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate is found in Uvaria grandiflora. Based on a literature review very few articles have been published on (4S)-4alpha,5beta,6beta-Trihydroxy-6-(benzoyloxymethyl)-2-cyclohexene-1-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 34 35  0  0  0  0  0  0  0  0999 V2000
    0.7965   -1.2128   -0.6434 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3634   -0.3597    0.0721 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6025    0.3908    0.8882 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7371    0.4676    1.1431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6912    0.9218    0.1249 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3662    2.2402   -0.2845 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0074    1.1315    0.8805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0516    2.0857    1.6708 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1178    0.2540    0.6666 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0284   -0.8442   -0.0486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7344   -1.2101   -0.6693 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0567   -2.0194    0.2061 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0134    0.0671   -1.0421 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0125    0.8130   -1.7656 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8333   -0.2473   -0.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5521    0.6619    0.7052 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9327    0.7599    0.5924 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6260   -0.0561   -0.2751 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9289   -0.9607   -1.0196 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5468   -1.0519   -0.9002 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1637   -0.4587    1.6203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8381    1.2175    2.0101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4206    2.8612    0.4766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1025    0.4902    1.1125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9230   -1.4771   -0.1749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8999   -1.7536   -1.6387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6553   -2.4077    0.9106 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2258   -0.0571   -1.7867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8613    0.3413   -1.7807 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0148    1.3055    1.3880 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5198    1.4678    1.1688 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7108    0.0031   -0.3804 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4746   -1.6012   -1.7008 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0046   -1.7625   -1.4859 H   0  0  0  0  0  0  0  0  0  0  0  0
 12 11  1  0
 11 10  1  0
 10  9  2  0
  9  7  1  0
  7  8  2  0
  7  5  1  0
  5  6  1  6
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  0
  2 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
  5 13  1  0
 13 14  1  0
 13 11  1  0
 20 15  1  0
 12 27  1  0
 11 26  1  6
 10 25  1  0
  9 24  1  0
  6 23  1  0
  4 21  1  0
  4 22  1  0
 16 30  1  0
 17 31  1  0
 18 32  1  0
 19 33  1  0
 20 34  1  0
 13 28  1  6
 14 29  1  0
M  END


  Mrv1652309032220342D          

 20 21  0  0  1  0            999 V2000
    4.5468   -0.0233    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8289   -0.7985    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2986   -1.4305    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4862   -1.2873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9559   -1.9192    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4256   -1.2873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6704   -2.3317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3848   -1.9192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6704   -3.1567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9559   -3.5692    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2414   -3.1567    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5269   -3.5692    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2414   -2.3317    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5269   -1.9192    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6414   -0.9418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1717   -0.3098    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9842   -0.4531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2663   -1.2283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7360   -1.8603    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9236   -1.7170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  1  1  0  0  0
  2 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 15 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0180234

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@H]1C=CC(=O)[C@@](O)(COC(=O)C2=CC=CC=C2)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C14H14O6/c15-10-6-7-11(16)14(19,12(10)17)8-20-13(18)9-4-2-1-3-5-9/h1-7,10,12,15,17,19H,8H2/t10-,12+,14-/m0/s1

> <INCHI_KEY>
ISGGRGRMTBVSEN-SUHUHFCYSA-N

> <FORMULA>
C14H14O6

> <MOLECULAR_WEIGHT>
278.26

> <EXACT_MASS>
278.079038171

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
26.181678144042493

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1R,5S,6R)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate

> <JCHEM_LOGP>
0.5022078476666672

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.346691089606587

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.26319206694746

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3780177577329615

> <JCHEM_POLAR_SURFACE_AREA>
104.06

> <JCHEM_REFRACTIVITY>
69.4809

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(1R,5S,6R)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  O   UNK     0       8.487  -0.043   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       9.014  -1.491   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       8.024  -2.670   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       6.508  -2.403   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.518  -3.583   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       4.528  -2.403   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.851  -4.353   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       8.185  -3.583   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       6.851  -5.893   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.518  -6.663   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.184  -5.893   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.850  -6.663   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       4.184  -4.353   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       2.850  -3.583   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      10.531  -1.758   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.521  -0.578   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.037  -0.846   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.564  -2.293   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.574  -3.473   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      11.057  -3.205   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   15                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7   13                                             
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11    5   14                                                  
CONECT   14   13                                                            
CONECT   15    2   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   15                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   42    0
END

View in JSmol

Synonyms

Value	Source
(4S)-4a,5b,6b-Trihydroxy-6-(benzoyloxymethyl)-2-cyclohexene-1-one	Generator
(4S)-4Α,5β,6β-trihydroxy-6-(benzoyloxymethyl)-2-cyclohexene-1-one	Generator

Chemical Formula

C₁₄H₁₄O₆

Average Mass

278.2600 Da

Monoisotopic Mass

278.07904 Da

IUPAC Name

[(1R,5S,6R)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate

Traditional Name

[(1R,5S,6R)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate

CAS Registry Number

Not Available

SMILES

O[C@H]1C=CC(=O)[C@@](O)(COC(=O)C2=CC=CC=C2)[C@@H]1O

InChI Identifier

InChI=1S/C14H14O6/c15-10-6-7-11(16)14(19,12(10)17)8-20-13(18)9-4-2-1-3-5-9/h1-7,10,12,15,17,19H,8H2/t10-,12+,14-/m0/s1

InChI Key

ISGGRGRMTBVSEN-SUHUHFCYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Uvaria grandiflora	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzoic acid esters. These are ester derivatives of benzoic acid.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzoic acids and derivatives

Direct Parent

Benzoic acid esters

Alternative Parents

Substituents

Benzoate ester
Benzoyl
Cyclohexenone
Acyloin
Cyclitol or derivatives
Tertiary alcohol
Cyclic ketone
Carboxylic acid ester
Ketone
Secondary alcohol
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Polyol
Organic oxide
Alcohol
Carbonyl group
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.5	ChemAxon
pKa (Strongest Acidic)	11.26	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.06 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	69.48 m³·mol⁻¹	ChemAxon
Polarizability	26.18 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101165036

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate (NP0180234)

MOL for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

3D MOL for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

3D SDF for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

3D-SDF for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

PDB for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

3D PDB for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

SMILES for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

INCHI for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

Structure for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)

3D Structure for NP0180234 ([(1r,5s,6r)-1,5,6-trihydroxy-2-oxocyclohex-3-en-1-yl]methyl benzoate)