NP-MRD: Showing NP-Card for 1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol (NP0179887)

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Record Information

Version

2.0

Created at

2022-09-03 18:09:16 UTC

Updated at

2022-09-03 18:09:16 UTC

NP-MRD ID

NP0179887

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol

Description

Centellasaponin B belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton. Centellasaponin B is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Centellasaponin B has been detected, but not quantified in, green vegetables. 1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol is found in Flammulina velutipes. This could make centellasaponin b a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
    4.4729   -1.1619   -1.0376 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1131   -0.7328   -0.6280 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9682   -1.3760   -1.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7420   -0.9142   -0.6146 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6562    0.1806    0.2164 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7948    0.8235    0.6290 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0141    0.3679    0.2083 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1655    1.0195    0.6267 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7135    0.6020    0.6209 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7548    1.9983    1.1473 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1872   -0.3663    1.6688 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1217    0.2578    2.4622 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7605   -1.5342    0.8862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6440   -1.1797   -0.5625 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6934   -1.5998   -1.3393 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3840   -1.5887   -1.0519 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6214    0.3545   -0.5443 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0898    0.8322   -1.8534 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0114    0.8916   -0.3314 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4503   -1.7949   -1.9446 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0736   -0.2347   -1.1800 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9244   -1.6854   -0.1631 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0853   -2.2365   -1.6968 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7102    1.6827    1.2822 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0985    1.8070    1.2248 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125    2.7507    0.4372 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1406    2.0241    2.0751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7951    2.2061    1.4683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2988   -0.6769    2.2812 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5813   -0.3933    3.0184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8102   -1.6516    1.2228 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1421   -2.4203    1.1247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1676   -2.3732   -0.9856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4005    1.6986   -1.7637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9400    1.1873   -2.4799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5887    0.0420   -2.4558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5950    0.6835   -1.2544 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9315    1.9926   -0.2517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4834    0.5179    0.5784 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  5  9  1  0
  9 10  1  1
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  6
 14 16  1  0
 14 17  1  0
 17 18  1  0
 17 19  1  0
  7  2  1  0
 17  9  1  0
 16  4  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  6 24  1  0
  8 25  1  0
 10 26  1  0
 10 27  1  0
 10 28  1  0
 11 29  1  1
 12 30  1  0
 13 31  1  0
 13 32  1  0
 15 33  1  0
 18 34  1  0
 18 35  1  0
 18 36  1  0
 19 37  1  0
 19 38  1  0
 19 39  1  0
M  END


  Mrv0541 05061311382D          

 19 21  0  0  0  0            999 V2000
    4.3090   -1.4046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4575    0.6467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3203   -0.0281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0195    0.2385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9001   -1.6428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6250   -0.0159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1197   -1.6427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5358   -1.1169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9893   -0.5417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3982   -0.3035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1268   -1.3552    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7400   -1.2658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4999   -0.1173    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0605   -0.5572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6396   -0.9304    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0340    0.2223    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3576   -1.8128    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0569   -0.3464    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6113   -0.9304    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  8  1  1  0  0  0  0
  8  5  2  0  0  0  0
  9  6  1  0  0  0  0
 10  6  2  0  0  0  0
 10  8  1  0  0  0  0
 11  5  1  0  0  0  0
 11  9  2  0  0  0  0
 12  7  1  0  0  0  0
 13  2  1  0  0  0  0
 13  3  1  0  0  0  0
 14  4  1  0  0  0  0
 14  9  1  0  0  0  0
 14 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15  7  1  0  0  0  0
 15 13  1  0  0  0  0
 16 10  1  0  0  0  0
 17 12  1  0  0  0  0
 18 15  1  0  0  0  0
 19 11  1  0  0  0  0
 19 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0179887

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC2=C(C=C1O)C1(C)C(O)CC(O)(O2)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O4/c1-8-5-11-9(6-10(8)16)14(4)12(17)7-15(18,19-11)13(14,2)3/h5-6,12,16-18H,7H2,1-4H3

> <INCHI_KEY>
DHKFEYFQGRWJNR-UHFFFAOYSA-N

> <FORMULA>
C15H20O4

> <MOLECULAR_WEIGHT>
264.3169

> <EXACT_MASS>
264.136159128

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
28.19895716823466

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol

> <ALOGPS_LOGP>
1.55

> <JCHEM_LOGP>
2.587784801333334

> <ALOGPS_LOGS>
-1.96

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.480272427375734

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.144658566615668

> <JCHEM_PKA_STRONGEST_BASIC>
-3.081219148479372

> <JCHEM_POLAR_SURFACE_AREA>
69.92

> <JCHEM_REFRACTIVITY>
70.41250000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.89e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       8.043  -2.622   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.854   1.207   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.598  -0.052   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.903   0.445   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.414  -3.067   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.900  -0.030   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.223  -3.066   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.600  -2.085   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.713  -1.011   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.343  -0.567   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.970  -2.530   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.381  -2.363   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.933  -0.219   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.980  -1.040   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.194  -1.737   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       7.530   0.415   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       2.534  -3.384   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       0.106  -0.647   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       3.008  -1.737   0.000  0.00  0.00           O+0
CONECT    1    8                                                            
CONECT    2   13                                                            
CONECT    3   13                                                            
CONECT    4   14                                                            
CONECT    5    8   11                                                       
CONECT    6    9   10                                                       
CONECT    7   12   15                                                       
CONECT    8    1    5   10                                                  
CONECT    9    6   11   14                                                  
CONECT   10    6    8   16                                                  
CONECT   11    5    9   19                                                  
CONECT   12    7   14   17                                                  
CONECT   13    2    3   14   15                                             
CONECT   14    4    9   12   13                                             
CONECT   15    7   13   18   19                                             
CONECT   16   10                                                            
CONECT   17   12                                                            
CONECT   18   15                                                            
CONECT   19   11   15                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   42    0
END

View in JSmol

Synonyms

Value	Source
(+)-Centellasaponin b	HMDB

Chemical Formula

C₁₅H₂₀O₄

Average Mass

264.3169 Da

Monoisotopic Mass

264.13616 Da

IUPAC Name

1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol

Traditional Name

1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol

CAS Registry Number

Not Available

SMILES

CC1=CC2=C(C=C1O)C1(C)C(O)CC(O)(O2)C1(C)C

InChI Identifier

InChI=1S/C15H20O4/c1-8-5-11-9(6-10(8)16)14(4)12(17)7-15(18,19-11)13(14,2)3/h5-6,12,16-18H,7H2,1-4H3

InChI Key

DHKFEYFQGRWJNR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Flammulina velutipes	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpene saponins. These are glycosylated derivatives of triterpene sapogenins. The sapogenin moiety backbone is usually based on the oleanane, ursane, taraxastane, bauerane, lanostane, lupeol, lupane, dammarane, cycloartane, friedelane, hopane, 9b,19-cyclo-lanostane, cycloartane, or cycloartanol skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Triterpene saponins

Alternative Parents

Substituents

Triterpene saponin
Triterpenoid
12-hydroxysteroid
Hydroxysteroid
7-hydroxysteroid
Steroid
Disaccharide
Glycosyl compound
O-glycosyl compound
Oxane
Cyclic alcohol
Secondary alcohol
Carboxylic acid ester
Polyol
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Oxacycle
Acetal
Carboxylic acid derivative
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Alcohol
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.55	ALOGPS
logP	2.59	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	10.14	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	69.92 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	70.41 m³·mol⁻¹	ChemAxon
Polarizability	28.2 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0040123

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB019816

KNApSAcK ID

C00032805

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

85411973

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol (NP0179887)

MOL for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

3D MOL for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

3D SDF for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

3D-SDF for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

PDB for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

3D PDB for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

SMILES for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

INCHI for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

Structure for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)

3D Structure for NP0179887 (1,5,12,12-tetramethyl-8-oxatricyclo[7.2.1.0²,⁷]dodeca-2(7),3,5-triene-4,9,11-triol)