Record Information |
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Version | 1.0 |
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Created at | 2022-09-03 17:59:16 UTC |
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Updated at | 2022-09-03 17:59:16 UTC |
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NP-MRD ID | NP0179753 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | {[(4e,6z,8s,9s,10e,12s,13r,14s,16s,17r)-3,22-dihydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-20,21-dioxo-2-azabicyclo[16.3.1]docosa-1(22),2,4,6,10,18-hexaen-9-yl]oxy}methanimidic acid |
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Description | Herbimycin E belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. It was first documented in 2010 (PMID: 20564183). Based on a literature review a significant number of articles have been published on Herbimycin E (PMID: 32273216) (PMID: 25446094) (PMID: 22890360) (PMID: 20384943). |
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Structure | CO[C@H]1C[C@H](C)[C@@H](OC)C2=CC(=O)C(=O)C(N=C(O)\C(C)=C\C=C/[C@H](OC)[C@@H](OC(O)=N)\C(C)=C\[C@H](C)[C@H]1OC)=C2O InChI=1S/C30H42N2O10/c1-15-10-9-11-21(38-5)28(42-30(31)37)17(3)12-16(2)27(41-8)22(39-6)13-18(4)26(40-7)19-14-20(33)25(35)23(24(19)34)32-29(15)36/h9-12,14,16,18,21-22,26-28,34H,13H2,1-8H3,(H2,31,37)(H,32,36)/b11-9-,15-10+,17-12+/t16-,18-,21-,22-,26+,27+,28-/m0/s1 |
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Synonyms | Not Available |
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Chemical Formula | C30H42N2O10 |
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Average Mass | 590.6700 Da |
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Monoisotopic Mass | 590.28395 Da |
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IUPAC Name | {[(4E,6Z,8S,9S,10E,12S,13R,14S,16S,17R)-3,22-dihydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-20,21-dioxo-2-azabicyclo[16.3.1]docosa-1(22),2,4,6,10,18-hexaen-9-yl]oxy}methanimidic acid |
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Traditional Name | {[(4E,6Z,8S,9S,10E,12S,13R,14S,16S,17R)-3,22-dihydroxy-8,13,14,17-tetramethoxy-4,10,12,16-tetramethyl-20,21-dioxo-2-azabicyclo[16.3.1]docosa-1(22),2,4,6,10,18-hexaen-9-yl]oxy}methanimidic acid |
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CAS Registry Number | Not Available |
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SMILES | CO[C@H]1C[C@H](C)[C@@H](OC)C2=CC(=O)C(=O)C(N=C(O)\C(C)=C\C=C/[C@H](OC)[C@@H](OC(O)=N)\C(C)=C\[C@H](C)[C@H]1OC)=C2O |
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InChI Identifier | InChI=1S/C30H42N2O10/c1-15-10-9-11-21(38-5)28(42-30(31)37)17(3)12-16(2)27(41-8)22(39-6)13-18(4)26(40-7)19-14-20(33)25(35)23(24(19)34)32-29(15)36/h9-12,14,16,18,21-22,26-28,34H,13H2,1-8H3,(H2,31,37)(H,32,36)/b11-9-,15-10+,17-12+/t16-,18-,21-,22-,26+,27+,28-/m0/s1 |
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InChI Key | JPFKXBRAIMKSHO-PVMVKREDSA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | Not Available |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as macrolactams. These are cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring. They are nitrogen analogues (the a nitrogen atom replacing the o atom of the cyclic carboxylic acid group ) of the naturally occurring macrolides. |
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Kingdom | Organic compounds |
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Super Class | Phenylpropanoids and polyketides |
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Class | Macrolactams |
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Sub Class | Not Available |
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Direct Parent | Macrolactams |
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Alternative Parents | |
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Substituents | - Macrolactam
- Carbamic acid ester
- Vinylogous acid
- Carboxamide group
- Ketone
- Lactam
- Secondary carboxylic acid amide
- Cyclic ketone
- Carboxylic acid derivative
- Dialkyl ether
- Ether
- Azacycle
- Organoheterocyclic compound
- Organic oxide
- Organic oxygen compound
- Organic nitrogen compound
- Hydrocarbon derivative
- Organonitrogen compound
- Organooxygen compound
- Carbonyl group
- Aliphatic heteropolycyclic compound
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Molecular Framework | Aliphatic heteropolycyclic compounds |
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External Descriptors | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Nong XH, Tu ZC, Qi SH: Ansamycin derivatives from the marine-derived Streptomyces sp. SCSGAA 0027 and their cytotoxic and antiviral activities. Bioorg Med Chem Lett. 2020 Jun 1;30(11):127168. doi: 10.1016/j.bmcl.2020.127168. Epub 2020 Apr 3. [PubMed:32273216 ]
- Kim SH, Kang JG, Kim CS, Ihm SH, Choi MG, Yoo HJ, Lee SJ: Herbimycin A inhibits cell growth with reversal of epithelial-mesenchymal transition in anaplastic thyroid carcinoma cells. Biochem Biophys Res Commun. 2014 Dec 12;455(3-4):363-70. doi: 10.1016/j.bbrc.2014.11.018. Epub 2014 Nov 15. [PubMed:25446094 ]
- Zuo DC, Choi S, Shahi PK, Kim MY, Park CG, Kim YD, Lee J, Chang IY, Lee HS, Yeom SC, Moon HJ, Seong SY, So I, Jun JY: Action of lipopolysaccharide on interstitial cells of cajal from mouse small intestine. Pharmacology. 2012;90(3-4):151-9. doi: 10.1159/000340018. Epub 2012 Aug 7. [PubMed:22890360 ]
- Li X, Kato N, Mezawa M, Li Z, Wang Z, Yang L, Sasaki Y, Kaneko T, Takai H, Yoshimura A, Ogata Y: Transcriptional regulation of bone sialoprotein gene by Porphyromonas gingivalis lipopolysaccharide. J Cell Biochem. 2010 Jul 1;110(4):823-33. doi: 10.1002/jcb.22594. [PubMed:20564183 ]
- Villalba N, Kun A, Stankevicius E, Simonsen U: Role for tyrosine kinases in contraction of rat penile small arteries. J Sex Med. 2010 Jun;7(6):2086-2095. doi: 10.1111/j.1743-6109.2010.01788.x. Epub 2010 Apr 1. [PubMed:20384943 ]
- LOTUS database [Link]
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