NP-MRD: Showing NP-Card for (1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol (NP0178288)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-03 16:15:26 UTC

Updated at

2022-09-03 16:15:27 UTC

NP-MRD ID

NP0178288

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol

Description

(1S,4R)-1-[(2R,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol is found in Oplopanax horridus. Based on a literature review very few articles have been published on (1S,4R)-1-[(2R,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 47 47  0  0  0  0  0  0  0  0999 V2000
   -3.1853    2.3997    0.5264 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8507    1.3737    1.0217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2493   -0.0035    0.7953 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.2653   -0.1928   -0.6854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2055   -0.8953    1.3283 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9638   -0.0726    1.5030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1359   -1.2705    1.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5297   -1.8702    0.3197 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3151   -2.9325    0.8708 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4325   -1.1132   -0.4941 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0593   -2.1554   -1.4589 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0051    0.0117   -1.3338 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3705    0.5306   -1.8296 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2974   -0.0816   -0.8221 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2178    1.0141   -0.3266 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4736    2.2015    0.2068 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1929    0.4777    0.7052 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9680    1.4350   -1.4237 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4944   -0.5692    0.2347 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2633    2.2505   -0.0090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5252    3.4235    0.6307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7746    1.5224    1.5585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7803   -1.0685   -1.0882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7960    0.6944   -1.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3406   -0.1209   -1.0369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0139   -0.7724    0.7428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4108    0.8807    1.2720 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2141    0.1152    2.6204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7902   -2.0809    2.0100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3635   -1.1281    2.3353 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1974   -2.4766   -0.3216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1613   -3.3661    1.5944 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4550   -1.6981   -2.3610 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7416   -2.8198   -0.9298 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1821   -2.7811   -1.7950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4524    0.8767   -0.8645 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6098   -0.3017   -2.2241 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5634    0.2574   -2.8710 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4067    1.6493   -1.8057 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9281   -0.8775   -1.2196 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0342    2.5635    1.1145 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4828    3.0645   -0.4936 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4125    1.9918    0.4496 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1327    1.0569    0.5993 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3819   -0.5770    0.4603 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8174    0.6314    1.7368 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7140    0.8035   -1.6137 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 15  1  0
 15 17  1  0
 15 18  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 10  1  0
 10 11  1  6
 10 19  1  0
 10  8  1  0
  8  9  1  0
  8  7  1  0
  7  6  1  0
  6  3  1  0
  3  4  1  0
  3  5  1  1
  3  2  1  0
  2  1  2  3
 19 14  1  0
 16 41  1  0
 16 42  1  0
 16 43  1  0
 17 44  1  0
 17 45  1  0
 17 46  1  0
 18 47  1  0
 14 40  1  6
 13 38  1  0
 13 39  1  0
 12 36  1  0
 12 37  1  0
 11 33  1  0
 11 34  1  0
 11 35  1  0
  8 31  1  6
  9 32  1  0
  7 29  1  0
  7 30  1  0
  6 27  1  0
  6 28  1  0
  4 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  2 22  1  0
  1 20  1  0
  1 21  1  0
M  END


  Mrv1652309032218152D          

 19 19  0  0  1  0            999 V2000
    1.4590    5.3074    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9070    4.6943    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1619    3.9097    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3773    3.6548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9466    4.1647    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4169    3.1251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8649    2.5120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1198    1.7274    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9268    1.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0157    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3297   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8146   -1.4901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9971   -0.3378    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3378   -1.3076    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  1  0  0  0
  3  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
 10  8  1  1  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 15 18  1  0  0  0  0
 14 19  1  0  0  0  0
 10 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0178288

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)(O)[C@@H]1CC[C@@](C)(O1)[C@@H](O)CC[C@@](C)(O)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C15H28O4/c1-6-14(4,18)9-7-11(16)15(5)10-8-12(19-15)13(2,3)17/h6,11-12,16-18H,1,7-10H2,2-5H3/t11-,12-,14-,15+/m0/s1

> <INCHI_KEY>
HSXGLWCOJRXCCK-NZBPQXDJSA-N

> <FORMULA>
C15H28O4

> <MOLECULAR_WEIGHT>
272.385

> <EXACT_MASS>
272.198759382

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
47

> <JCHEM_AVERAGE_POLARIZABILITY>
30.454872158635013

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4R)-1-[(2R,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol

> <JCHEM_LOGP>
1.2659864086666661

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.340489204221559

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.775156293054401

> <JCHEM_PKA_STRONGEST_BASIC>
-2.92836845955261

> <JCHEM_POLAR_SURFACE_AREA>
69.92

> <JCHEM_REFRACTIVITY>
75.11730000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R)-1-[(2R,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       2.724   9.907   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.693   8.763   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.169   7.298   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.704   6.822   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       3.634   7.774   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.645   5.834   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.614   4.689   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.090   3.224   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       3.597   2.904   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.029   3.224   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.615  -1.536   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.521  -2.782   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.861  -0.631   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       0.631  -2.441   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      -0.186   1.175   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12   19                                             
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16   17   18                                             
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   15                                                            
CONECT   19   14   10                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₈O₄

Average Mass

272.3850 Da

Monoisotopic Mass

272.19876 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(C)(O)[C@@H]1CC[C@@](C)(O1)[C@@H](O)CC[C@@](C)(O)C=C

InChI Identifier

InChI=1S/C15H28O4/c1-6-14(4,18)9-7-11(16)15(5)10-8-12(19-15)13(2,3)17/h6,11-12,16-18H,1,7-10H2,2-5H3/t11-,12-,14-,15+/m0/s1

InChI Key

HSXGLWCOJRXCCK-NZBPQXDJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Oplopanax horridus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Fatty alcohol
Fatty acyl
Tertiary alcohol
Oxolane
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00053548

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53328174

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol (NP0178288)

MOL for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

3D MOL for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

3D SDF for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

3D-SDF for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

PDB for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

3D PDB for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

SMILES for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

INCHI for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

Structure for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)

3D Structure for NP0178288 ((1s,4r)-1-[(2r,5s)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-4-methylhex-5-ene-1,4-diol)