NP-MRD: Showing NP-Card for (1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione (NP0177978)

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Record Information

Version

2.0

Created at

2022-09-03 15:53:39 UTC

Updated at

2022-09-03 15:53:39 UTC

NP-MRD ID

NP0177978

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione

Description

CHEMBL3317742 belongs to the class of organic compounds known as naphthopyrans. Naphthopyrans are compounds containing a pyran ring fused to a naphthalene moiety. Furan is a 6 membered-ring non-aromatic ring with five carbon and one oxygen atoms. Naphthalene is a polycyclic aromatic hydrocarbon made up of two fused benzene rings. (1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione is found in Eurycoma longifolia. Based on a literature review very few articles have been published on CHEMBL3317742.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032217532D          

 29 33  0  0  1  0            999 V2000
    4.4285   -1.8303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4079   -1.0055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6833   -0.6111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9505   -0.9921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2321   -0.5661    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5103   -0.9993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7819   -0.6065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0747   -1.0312    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7775    0.2131    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0723    0.6413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5090    0.5886    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8118    1.0296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5342    1.3891    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9245    1.9449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3341    1.4885    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0065    2.2456    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9594    2.0078    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9402    2.8326    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6147    1.5134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3438    0.6632    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3280    0.2855    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8186    0.6168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6626    0.2137    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6201    1.0376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3665    0.6440    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3458    1.4687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0911    0.2495    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7950    0.6798    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1118   -0.5752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  6  0  0  0
  5 21  1  0  0  0  0
 11 21  1  0  0  0  0
 21 22  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  1  0  0  0  0
  3 23  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 28  1  1  0  0  0
 27 29  1  0  0  0  0
  2 29  1  0  0  0  0
M  END

     RDKit          3D

 55 59  0  0  0  0  0  0  0  0999 V2000
    3.1917    2.4257   -1.1345 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8002    1.1061   -0.5284 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5477    0.9650   -0.1717 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5223    2.0096   -0.3297 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6125    1.9507    0.6402 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6044    2.8564    0.1998 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3119    2.5321   -0.9447 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7104    3.4562   -1.6982 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5599    1.0879   -1.2149 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9010    1.0218   -1.6642 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5081    0.3642    0.0781 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5481    0.8841    0.8838 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5502   -1.1199    0.0243 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0883   -1.6811   -1.2517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1312   -1.6372    0.3272 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8998   -2.6450   -0.5770 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0943   -2.0558    1.7369 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0098   -3.2498    2.0641 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1615   -1.0098    2.6770 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5323    0.2940    2.2812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2099    0.6151    0.8532 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3425   -0.4046    0.1551 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0761   -0.3407    0.4474 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5484   -0.3056    1.8520 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8341   -1.4262   -0.2681 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5650   -2.6847    0.3232 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3495   -1.2781   -0.0975 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.9135   -2.2210   -0.9867 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8465    0.0838   -0.3863 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2646    2.4579   -1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6249    2.5795   -2.0706 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0361    3.2583   -0.4012 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0159    3.0156   -0.1929 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0913    2.0466   -1.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2706    2.3525    1.6316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9548    0.6980   -2.0266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0467    1.5715   -2.4575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1888    0.1507    1.0708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2489   -1.4631    0.8436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6729   -1.2335   -2.1606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9439   -2.7866   -1.2185 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1814   -1.5191   -1.2598 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9830   -2.2855   -1.4748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6465    0.3405    2.4874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1254    1.0515    3.0064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4454   -0.1350   -0.9478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5441   -1.3142    2.3494 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1347    0.4895    2.4833 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6574   -0.0644    1.8025 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6208   -1.4213   -1.3355 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1772   -3.3158   -0.1708 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5976   -1.6460    0.9244 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4827   -2.8710   -0.5292 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4807    0.0501   -1.3126 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5614    0.4001    0.4206 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 13  1  0
 13 15  1  0
 15 16  1  6
 15 22  1  0
 22 21  1  0
 21 20  1  1
 20 19  1  0
 19 17  1  0
 17 18  2  0
 21  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  2 29  1  0
 29 27  1  0
 27 28  1  0
 27 25  1  0
 25 26  1  0
 25 23  1  0
 23 24  1  1
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  1
 11 13  1  0
 17 15  1  0
 23  3  1  0
 23 22  1  0
 11 21  1  0
 14 40  1  0
 14 41  1  0
 14 42  1  0
 13 39  1  1
 16 43  1  0
 22 46  1  6
 20 44  1  0
 20 45  1  0
  5 35  1  1
  4 33  1  0
  4 34  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
 29 54  1  0
 29 55  1  0
 27 52  1  1
 28 53  1  0
 25 50  1  6
 26 51  1  0
 24 47  1  0
 24 48  1  0
 24 49  1  0
  9 36  1  6
 10 37  1  0
 12 38  1  0
M  END


  Mrv1652309032217532D          

 29 33  0  0  1  0            999 V2000
    4.4285   -1.8303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4079   -1.0055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6833   -0.6111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9505   -0.9921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2321   -0.5661    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5103   -0.9993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7819   -0.6065    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0747   -1.0312    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7775    0.2131    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0723    0.6413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5090    0.5886    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8118    1.0296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5342    1.3891    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9245    1.9449    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3341    1.4885    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0065    2.2456    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9594    2.0078    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9402    2.8326    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6147    1.5134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3438    0.6632    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3280    0.2855    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8186    0.6168    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6626    0.2137    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6201    1.0376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3665    0.6440    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3458    1.4687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0911    0.2495    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7950    0.6798    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1118   -0.5752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  6  0  0  0
  5 21  1  0  0  0  0
 11 21  1  0  0  0  0
 21 22  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  1  0  0  0  0
  3 23  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 28  1  1  0  0  0
 27 29  1  0  0  0  0
  2 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0177978

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@@]2(O)C3[C@@]4(COC2=O)[C@@H](CC2=C(C)C[C@H](O)[C@@H](O)[C@]32C)OC(=O)[C@H](O)[C@@]14O

> <INCHI_IDENTIFIER>
InChI=1S/C20H26O9/c1-7-4-10(21)12(22)17(3)9(7)5-11-18-6-28-16(25)19(26,15(17)18)8(2)20(18,27)13(23)14(24)29-11/h8,10-13,15,21-23,26-27H,4-6H2,1-3H3/t8-,10-,11+,12+,13-,15?,17+,18+,19+,20-/m0/s1

> <INCHI_KEY>
WTELTUSRXDOCFZ-UVBMKRHLSA-N

> <FORMULA>
C20H26O9

> <MOLECULAR_WEIGHT>
410.419

> <EXACT_MASS>
410.157682417

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
39.52190211046235

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,5S,6R,7R,8R,11R,16S,17S,18R)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0^{1,7}.0^{5,19}.0^{13,18}]nonadec-13-ene-4,9-dione

> <JCHEM_LOGP>
-2.3320456086666654

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.022825458785048

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.363098474976152

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1865575099166596

> <JCHEM_POLAR_SURFACE_AREA>
153.75

> <JCHEM_REFRACTIVITY>
94.88100000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5S,6R,7R,8R,11R,16S,17S,18R)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0^{1,7}.0^{5,19}.0^{13,18}]nonadec-13-ene-4,9-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       8.267  -3.416   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.228  -1.877   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.875  -1.141   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.508  -1.852   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.167  -1.057   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       2.819  -1.865   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       1.460  -1.132   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.139  -1.925   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.451   0.398   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       0.135   1.197   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       2.817   1.099   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.515   1.922   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       2.864   2.593   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.726   3.630   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.357   2.778   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.746   4.192   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.524   3.748   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       5.488   5.287   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       6.747   2.825   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.242   1.238   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.346   0.533   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.261   1.151   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.837   0.399   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.757   1.937   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.151   1.202   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       8.112   2.742   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       9.503   0.466   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      10.817   1.269   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       9.542  -1.074   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   29                                                  
CONECT    3    2    4   23                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   21                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13   21                                             
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17   22                                             
CONECT   16   15                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20    5   11   22                                             
CONECT   22   21   15   23                                                  
CONECT   23   22    3   24   25                                             
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27    2                                                       
MASTER        0    0    0    0    0    0    0    0   29    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₆O₉

Average Mass

410.4190 Da

Monoisotopic Mass

410.15768 Da

IUPAC Name

(1R,5S,6R,7R,8R,11R,16S,17S,18R)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0^{1,7}.0^{5,19}.0^{13,18}]nonadec-13-ene-4,9-dione

Traditional Name

(1R,5S,6R,7R,8R,11R,16S,17S,18R)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0^{1,7}.0^{5,19}.0^{13,18}]nonadec-13-ene-4,9-dione

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@@]2(O)C3[C@@]4(COC2=O)[C@@H](CC2=C(C)C[C@H](O)[C@@H](O)[C@]32C)OC(=O)[C@H](O)[C@@]14O

InChI Identifier

InChI=1S/C20H26O9/c1-7-4-10(21)12(22)17(3)9(7)5-11-18-6-28-16(25)19(26,15(17)18)8(2)20(18,27)13(23)14(24)29-11/h8,10-13,15,21-23,26-27H,4-6H2,1-3H3/t8-,10-,11+,12+,13-,15?,17+,18+,19+,20-/m0/s1

InChI Key

WTELTUSRXDOCFZ-UVBMKRHLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Eurycoma longifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthopyrans. Naphthopyrans are compounds containing a pyran ring fused to a naphthalene moiety. Furan is a 6 membered-ring non-aromatic ring with five carbon and one oxygen atoms. Naphthalene is a polycyclic aromatic hydrocarbon made up of two fused benzene rings.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Naphthopyrans

Sub Class

Not Available

Direct Parent

Naphthopyrans

Alternative Parents

Substituents

Naphthopyran
Naphthalene
Caprolactone
Delta valerolactone
Delta_valerolactone
Oxepane
Dicarboxylic acid or derivatives
Pyran
Oxane
Cyclic alcohol
Tertiary alcohol
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Carboxylic acid derivative
Polyol
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.3	ChemAxon
pKa (Strongest Acidic)	11.36	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	153.75 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	94.88 m³·mol⁻¹	ChemAxon
Polarizability	39.52 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

58136645

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

118708395

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione (NP0177978)

MOL for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

3D MOL for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

3D SDF for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

3D-SDF for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

PDB for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

3D PDB for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

SMILES for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

INCHI for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

Structure for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)

3D Structure for NP0177978 ((1r,5s,6r,7r,8r,11r,16s,17s,18r)-5,7,8,16,17-pentahydroxy-6,14,18-trimethyl-3,10-dioxapentacyclo[9.8.0.0¹,⁷.0⁵,¹⁹.0¹³,¹⁸]nonadec-13-ene-4,9-dione)