NP-MRD: Showing NP-Card for 3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid (NP0177611)

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Record Information

Version

2.0

Created at

2022-09-03 15:28:39 UTC

Updated at

2022-09-03 15:28:39 UTC

NP-MRD ID

NP0177611

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid

Description

3-Oxo-N-(2-oxooxolan-3-yl)octanimidic acid belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. 3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid is found in Azospirillum lipoferum. 3-Oxo-N-(2-oxooxolan-3-yl)octanimidic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
    6.2197    0.6998   -1.0181 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1231    1.2042   -0.1095 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9338    0.2461   -0.1060 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9027    0.8252    0.8190 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6553    0.0292    0.9653 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8776   -0.1776   -0.2711 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2404    0.3287   -1.3109 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3475   -1.0126   -0.2141 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5943   -0.2053   -0.2380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4893    1.0441   -0.2822 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8684   -0.7884   -0.2131 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1239   -0.0712   -0.2334 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9351   -0.3788    1.0063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3483   -0.1650    0.5205 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3050   -0.6279   -0.8167 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0115   -0.5136   -1.3166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7203   -0.7683   -2.5276 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1365    1.2789   -0.8210 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3967   -0.3804   -0.9144 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9592    0.8767   -2.0948 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5394    1.3319    0.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7485    2.1722   -0.4545 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5209    0.1554   -1.1249 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2481   -0.7850    0.2092 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7064    1.8608    0.4848 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3893    0.8611    1.8373 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9818    0.6250    1.6516 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8248   -0.9364    1.4869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829   -1.5841    0.7603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3532   -1.8029   -0.9938 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9210   -1.8415   -0.1766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9246    1.0206   -0.2683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8071   -1.4562    1.2796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6542    0.3018    1.8357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5947    0.9127    0.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0231   -0.7961    1.1463 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 16 12  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  2 22  1  0
  3 23  1  0
  3 24  1  0
  4 25  1  0
  4 26  1  0
  5 27  1  0
  5 28  1  0
  8 29  1  0
  8 30  1  0
 11 31  1  0
 12 32  1  6
 13 33  1  0
 13 34  1  0
 14 35  1  0
 14 36  1  0
M  END


  Mrv1533004251504162D          

 17 17  0  0  0  0            999 V2000
    2.7964   -3.9080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5108   -4.3205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2253   -3.9080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9398   -4.3205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6542   -3.9080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3687   -4.3205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3687   -5.1455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0832   -3.9080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7976   -4.3205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7976   -5.1455    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5121   -3.9080    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.2266   -4.3205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9803   -3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5323   -4.5980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1198   -5.3125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3128   -5.1410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6997   -5.6930    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 12 16  1  0  0  0  0
 16 17  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0177611

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(=O)CC(=O)NC1CCOC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C12H19NO4/c1-2-3-4-5-9(14)8-11(15)13-10-6-7-17-12(10)16/h10H,2-8H2,1H3,(H,13,15)

> <INCHI_KEY>
FXCMGCFNLNFLSH-UHFFFAOYSA-N

> <FORMULA>
C12H19NO4

> <MOLECULAR_WEIGHT>
241.287

> <EXACT_MASS>
241.131408096

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
25.622964524748973

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-oxo-N-(2-oxooxolan-3-yl)octanamide

> <ALOGPS_LOGP>
0.96

> <JCHEM_LOGP>
1.1737519959999998

> <ALOGPS_LOGS>
-1.75

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.352861848675015

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.297373335951287

> <JCHEM_PKA_STRONGEST_BASIC>
-3.910333054207715

> <JCHEM_POLAR_SURFACE_AREA>
72.47

> <JCHEM_REFRACTIVITY>
61.18310000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.28e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-oxo-N-(2-oxooxolan-3-yl)octanamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       5.220  -7.295   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.554  -8.065   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.887  -7.295   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.221  -8.065   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.555  -7.295   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.888  -8.065   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      11.888  -9.605   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      13.222  -7.295   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.556  -8.065   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      14.556  -9.605   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0      15.889  -7.295   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0      17.223  -8.065   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      18.630  -7.439   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      19.660  -8.583   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      18.890  -9.917   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      17.384  -9.597   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      16.239 -10.627   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   16                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   12   17                                                  
CONECT   17   16                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Value	Source
3-oxo-N-(2-Oxooxolan-3-yl)octanimidate	Generator
3-oxo-C8-HSL	MeSH
3O-C12-HSL	MeSH
N-(3-Oxododecanoyl)-L-homoserine lactone	MeSH
N-(3-Oxododecanoyl)homoserine lactone	MeSH
N3-ODDHL	MeSH
3-oxo-C12-HSL	MeSH
N-(3-Oxododecanoyl)-homoserine lactone	MeSH
N-3-Oxododecanoyl-L-homoserine lactone	MeSH

Chemical Formula

C₁₂H₁₉NO₄

Average Mass

241.2870 Da

Monoisotopic Mass

241.13141 Da

IUPAC Name

3-oxo-N-(2-oxooxolan-3-yl)octanamide

Traditional Name

3-oxo-N-(2-oxooxolan-3-yl)octanamide

CAS Registry Number

Not Available

SMILES

CCCCCC(=O)CC(=O)NC1CCOC1=O

InChI Identifier

InChI=1S/C12H19NO4/c1-2-3-4-5-9(14)8-11(15)13-10-6-7-17-12(10)16/h10H,2-8H2,1H3,(H,13,15)

InChI Key

FXCMGCFNLNFLSH-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Azospirillum lipoferum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids and derivatives

Alternative Parents

Substituents

Alpha-amino acid ester
N-acyl-alpha amino acid or derivatives
Acyl-homoserine lactone
Fatty amide
Gamma butyrolactone
N-acyl-amine
Fatty acyl
1,3-dicarbonyl compound
Oxolane
Carboxamide group
Carboxylic acid ester
Ketone
Lactone
Secondary carboxylic acid amide
Monocarboxylic acid or derivatives
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Organopnictogen compound
Aldehyde
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

an acyl-homoserine lactone (CPD-10782 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.96	ALOGPS
logP	1.17	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	10.3	ChemAxon
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	72.47 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	61.18 m³·mol⁻¹	ChemAxon
Polarizability	25.62 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid (NP0177611)

MOL for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

3D MOL for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

3D SDF for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

3D-SDF for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

PDB for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

3D PDB for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

SMILES for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

INCHI for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

Structure for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)

3D Structure for NP0177611 (3-oxo-n-(2-oxooxolan-3-yl)octanimidic acid)