NP-MRD: Showing NP-Card for (2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate (NP0177587)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-03 15:26:44 UTC

Updated at

2022-09-03 15:26:44 UTC

NP-MRD ID

NP0177587

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate

Description

CHEMBL452113 belongs to the class of organic compounds known as galloyl esters. These are organic compounds that contain an ester derivative of 3,4,5-trihydroxybenzoic acid. (2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate is found in Pimenta dioica. Based on a literature review very few articles have been published on CHEMBL452113.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032217262D          

 42 45  0  0  1  0            999 V2000
    0.7145    5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6674   -2.9599    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -3.7445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8974   -4.4120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7179   -4.3257    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -3.7445    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8974   -4.4120    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6674   -2.9599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4521   -2.7050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0652   -3.2570    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8936   -4.0640    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8498   -3.0021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0213   -2.1951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8059   -1.9402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9775   -1.1332    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4190   -2.4922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2036   -2.2373    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2475   -3.2992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8606   -3.8512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4629   -3.5541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  6  9  1  0  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  0  0  0  0
 17 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  2  0  0  0  0
 26 34  1  0  0  0  0
 12 35  1  0  0  0  0
 35 36  1  1  0  0  0
 35 37  1  0  0  0  0
 37 38  1  6  0  0  0
 37 39  1  0  0  0  0
 10 39  1  0  0  0  0
 39 40  1  1  0  0  0
  5 41  1  0  0  0  0
 41 42  1  0  0  0  0
  2 42  1  0  0  0  0
M  END

     RDKit          3D

 82 85  0  0  0  0  0  0  0  0999 V2000
    8.0017    4.1740    1.4380 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2724    2.9704    0.8796 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4739    2.5853   -0.3678 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7747    1.4120   -0.9409 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5613    1.1299   -0.1270 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7277   -0.0244   -0.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3081    0.3827   -2.0679 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4887   -1.2993   -0.7755 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5961   -0.0872    0.1183 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6994   -1.0716   -0.1861 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4943   -0.4759   -0.5452 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4939   -1.3710   -0.8330 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7649   -0.9072   -0.1241 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8300   -1.7682   -0.3636 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9983   -1.4136    0.2409 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4683   -2.3492    1.1545 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3916   -3.1483    0.5470 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.5209   -3.3885    1.5610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9700   -4.0109    2.6814 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8941   -2.4651   -0.6761 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6605   -3.1899   -1.8423 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1323   -1.1499   -0.7188 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0346   -0.1613   -0.2551 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4103    0.9468   -0.9877 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8992    1.0567   -2.1397 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3404    1.9526   -0.4938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9062    1.8542    0.7509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7892    2.8289    1.1905 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3721    2.7591    2.4306 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1042    3.9140    0.3653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9998    4.8716    0.8522 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5446    4.0167   -0.8728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8586    5.0966   -1.6929 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6576    3.0241   -1.2966 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7727   -2.7926   -0.5268 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3161   -3.4436   -1.6436 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6457   -3.0731    0.6329 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9056   -3.5851    1.7258 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3960   -1.8444    1.0813 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4804   -2.1180    1.8621 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9267    0.9379    1.3388 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3514    2.3023    1.8362 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6699    3.8151    2.2633 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2707    4.8934    1.8560 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5705    4.6944    0.6513 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1641    3.1323   -0.9953 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4260    1.6296   -1.9894 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5202    0.5838   -0.9401 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9090    2.0291   -0.1715 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2333    0.1071   -2.2418 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8914   -0.1603   -2.8303 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3767    1.4733   -2.2126 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9670   -1.9526   -1.5348 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4994   -1.1559   -1.1889 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5903   -1.8923    0.1293 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0098   -1.7207   -1.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2838   -1.2818   -1.9272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0159    0.1491   -0.3989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6348   -0.8895    0.9830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8277   -0.4768    0.8086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9963   -4.1848    0.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2623   -4.1238    1.1368 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9867   -2.4546    1.8898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1187   -4.4651    2.4997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9902   -2.3112   -0.5629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1450   -2.6454   -2.5020 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8103   -0.8720   -1.7218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6500    1.0060    1.3766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1919    2.0088    3.0751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2224    5.6471    0.2591 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4784    5.2235   -2.6116 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2470    3.1673   -2.2944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2102   -3.3198   -0.3380 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7012   -4.0791   -2.0646 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4055   -3.8496    0.4051 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2971   -3.2494    2.5899 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6907   -1.2145    1.6890 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1985   -2.3034    2.7750 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7071    0.1742    1.4867 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9857    0.6588    1.8636 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4196    2.9306    1.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8614    2.2016    2.8164 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5 41  1  0
 41 42  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 17 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  2  0
 24 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  1  0
 28 30  2  0
 30 31  1  0
 30 32  1  0
 32 33  1  0
 32 34  2  0
 12 35  1  0
 35 36  1  0
 35 37  1  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 42  2  1  0
 39 10  1  0
 22 15  1  0
 34 26  1  0
  1 43  1  0
  1 44  1  0
  1 45  1  0
  3 46  1  0
  4 47  1  0
  4 48  1  0
  5 49  1  1
 41 79  1  0
 41 80  1  0
 42 81  1  0
 42 82  1  0
  7 50  1  0
  7 51  1  0
  7 52  1  0
  8 53  1  0
  8 54  1  0
  8 55  1  0
 10 56  1  6
 12 57  1  6
 13 58  1  0
 13 59  1  0
 15 60  1  1
 17 61  1  6
 18 62  1  0
 18 63  1  0
 19 64  1  0
 20 65  1  1
 21 66  1  0
 22 67  1  6
 27 68  1  0
 29 69  1  0
 31 70  1  0
 33 71  1  0
 34 72  1  0
 35 73  1  1
 36 74  1  0
 37 75  1  6
 38 76  1  0
 39 77  1  1
 40 78  1  0
M  END


  Mrv1652309032217262D          

 42 45  0  0  1  0            999 V2000
    0.7145    5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6674   -2.9599    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -3.7445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8974   -4.4120    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7179   -4.3257    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -3.7445    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8974   -4.4120    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6674   -2.9599    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4521   -2.7050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0652   -3.2570    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8936   -4.0640    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8498   -3.0021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0213   -2.1951    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8059   -1.9402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9775   -1.1332    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4190   -2.4922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2036   -2.2373    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2475   -3.2992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8606   -3.8512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4629   -3.5541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  6  9  1  0  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  0  0  0  0
 17 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  2  0  0  0  0
 26 34  1  0  0  0  0
 12 35  1  0  0  0  0
 35 36  1  1  0  0  0
 35 37  1  0  0  0  0
 37 38  1  6  0  0  0
 37 39  1  0  0  0  0
 10 39  1  0  0  0  0
 39 40  1  1  0  0  0
  5 41  1  0  0  0  0
 41 42  1  0  0  0  0
  2 42  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0177587

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CC[C@H](CC1)C(C)(C)O[C@@H]1O[C@H](CO[C@@H]2O[C@@H](CO)[C@H](O)[C@H]2OC(=O)C2=CC(O)=C(O)C(O)=C2)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C28H40O14/c1-12-4-6-14(7-5-12)28(2,3)42-26-23(36)22(35)20(33)18(40-26)11-38-27-24(21(34)17(10-29)39-27)41-25(37)13-8-15(30)19(32)16(31)9-13/h4,8-9,14,17-18,20-24,26-27,29-36H,5-7,10-11H2,1-3H3/t14-,17+,18-,20-,21+,22+,23-,24-,26+,27-/m1/s1

> <INCHI_KEY>
ZPXRVNRKZYBYHR-KCVLAQGPSA-N

> <FORMULA>
C28H40O14

> <MOLECULAR_WEIGHT>
600.614

> <EXACT_MASS>
600.241805968

> <JCHEM_ACCEPTOR_COUNT>
13

> <JCHEM_ATOM_COUNT>
82

> <JCHEM_AVERAGE_POLARIZABILITY>
59.503822171103

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R,4S,5S)-4-hydroxy-5-(hydroxymethyl)-2-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-({2-[(1S)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate

> <JCHEM_LOGP>
0.8475650419999997

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.229891769466565

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.101366152284257

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9811633465953706

> <JCHEM_POLAR_SURFACE_AREA>
225.05999999999997

> <JCHEM_REFRACTIVITY>
143.09070000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4S,5S)-4-hydroxy-5-(hydroxymethyl)-2-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-({2-[(1S)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       1.334  10.010   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334   8.470   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667   7.700   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667   6.160   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334   5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.206   3.850   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.874   3.850   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       1.334   2.310   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.000  -0.000   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.246  -5.525   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -0.770  -6.990   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.675  -8.236   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -3.207  -8.075   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       0.770  -6.990   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       1.675  -8.236   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.246  -5.525   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.711  -5.049   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       3.855  -6.080   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       3.535  -7.586   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       5.320  -5.604   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.640  -4.098   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.104  -3.622   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       7.425  -2.115   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       8.249  -4.652   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       9.713  -4.176   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       7.929  -6.158   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       9.073  -7.189   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       6.464  -6.634   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      -4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      -4.001   2.310   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -1.334   3.850   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -0.000   6.160   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -0.000   7.700   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   42                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   41                                                  
CONECT    6    5    7    8    9                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   39                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   35                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   20                                                  
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20   17   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   15   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   34                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   26                                                       
CONECT   35   12   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37   10   40                                                  
CONECT   40   39                                                            
CONECT   41    5   42                                                       
CONECT   42   41    2                                                       
MASTER        0    0    0    0    0    0    0    0   42    0   90    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₄₀O₁₄

Average Mass

600.6140 Da

Monoisotopic Mass

600.24181 Da

IUPAC Name

(2R,3R,4S,5S)-4-hydroxy-5-(hydroxymethyl)-2-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-({2-[(1S)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate

Traditional Name

(2R,3R,4S,5S)-4-hydroxy-5-(hydroxymethyl)-2-{[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-({2-[(1S)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate

CAS Registry Number

Not Available

SMILES

CC1=CC[C@H](CC1)C(C)(C)O[C@@H]1O[C@H](CO[C@@H]2O[C@@H](CO)[C@H](O)[C@H]2OC(=O)C2=CC(O)=C(O)C(O)=C2)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C28H40O14/c1-12-4-6-14(7-5-12)28(2,3)42-26-23(36)22(35)20(33)18(40-26)11-38-27-24(21(34)17(10-29)39-27)41-25(37)13-8-15(30)19(32)16(31)9-13/h4,8-9,14,17-18,20-24,26-27,29-36H,5-7,10-11H2,1-3H3/t14-,17+,18-,20-,21+,22+,23-,24-,26+,27-/m1/s1

InChI Key

ZPXRVNRKZYBYHR-KCVLAQGPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pimenta dioica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as galloyl esters. These are organic compounds that contain an ester derivative of 3,4,5-trihydroxybenzoic acid.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzoic acids and derivatives

Direct Parent

Galloyl esters

Alternative Parents

Substituents

Galloyl ester
P-hydroxybenzoic acid alkyl ester
M-hydroxybenzoic acid ester
P-hydroxybenzoic acid ester
O-glycosyl compound
Glycosyl compound
Disaccharide
Monoterpenoid
Monocyclic monoterpenoid
Aromatic monoterpenoid
P-menthane monoterpenoid
Benzoate ester
Pyrogallol derivative
Benzenetriol
Benzoyl
1-hydroxy-2-unsubstituted benzenoid
Phenol
1-hydroxy-4-unsubstituted benzenoid
Oxane
Oxolane
Carboxylic acid ester
Secondary alcohol
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Acetal
Carboxylic acid derivative
Oxacycle
Polyol
Primary alcohol
Alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.85	ChemAxon
pKa (Strongest Acidic)	8.1	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	13	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	225.06 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	143.09 m³·mol⁻¹	ChemAxon
Polarizability	59.5 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23340702

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

24879475

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate (NP0177587)

MOL for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

3D MOL for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

3D SDF for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

3D-SDF for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

PDB for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

3D PDB for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

SMILES for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

INCHI for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

Structure for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)

3D Structure for NP0177587 ((2r,3r,4s,5s)-4-hydroxy-5-(hydroxymethyl)-2-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-({2-[(1s)-4-methylcyclohex-3-en-1-yl]propan-2-yl}oxy)oxan-2-yl]methoxy}oxolan-3-yl 3,4,5-trihydroxybenzoate)