NP-MRD: Showing NP-Card for 2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0176647)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-03 14:20:44 UTC

Updated at

2022-09-03 14:20:44 UTC

NP-MRD ID

NP0176647

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Description

2-{[4,7-Dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol belongs to the class of organic compounds known as diterpene glycosides. These are diterpenoids in which an isoprene unit is glycosylated. 2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol is found in Clerodendrum bungei. 2-{[4,7-Dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161513452D          

 35 38  0  0  0  0            999 V2000
    0.7954   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7954   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5206    0.1716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6021    0.7019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9829   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -2.9684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -2.9684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -5.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -5.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -3.6829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 10 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
  7 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
  5 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 27 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 25 34  1  0  0  0  0
 34 35  1  0  0  0  0
M  END

     RDKit          3D

 75 78  0  0  0  0  0  0  0  0999 V2000
   -2.3634    4.0952    0.0261 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8052    3.1932   -1.0152 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5455    2.8768   -2.2468 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8077    4.0958   -2.9543 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7754    2.2123   -0.5722 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4466    2.6569   -0.0499 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5345    1.8027    0.1176 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4350    0.5013   -0.2186 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2401    0.0421   -0.7254 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0836   -1.2880   -1.0848 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8567    0.8930   -0.8993 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0246    0.3551   -1.4018 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1450   -0.0662   -0.6910 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6381   -1.2072   -1.2250 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8704   -1.6102   -0.7270 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.9504   -1.4683   -1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6301   -2.2829   -2.8953 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2407   -0.9532    0.5738 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.2115   -1.7567    1.1948 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9921   -0.9970    1.4391 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5248   -2.3000    1.4513 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9498   -0.1065    0.8304 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7003   -0.4996    1.2121 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5372   -0.5265   -0.1575 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6609   -0.9904   -1.6263 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0882   -1.6193    0.7190 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0006   -2.1264    1.7519 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2968   -1.3976    1.9677 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2617   -2.3087    2.4688 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8418   -0.8735    0.6663 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2061   -0.3127    0.9065 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0395   -2.0688   -0.2448 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8382    0.1225    0.1859 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5758    1.1474    1.2492 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8424    2.2993    0.6124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7509    3.9696    0.9508 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4538    5.1515   -0.2623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4299    3.8036    0.3100 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0108    4.0514   -1.5149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4577    2.3219   -2.2434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7771    2.3711   -2.9403 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8973    4.5246   -3.0301 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5482    3.6928    0.2271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7347   -1.7089   -1.4528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9377    0.7438   -0.7708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7711   -2.7188   -0.5188 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9036   -1.8018   -1.3259 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0955   -0.4256   -2.1165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3751   -3.1878   -2.5234 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6052    0.0546    0.3828 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8411   -1.1542    1.6390 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2436   -0.7146    2.4890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2007   -2.9486    1.7614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0872    0.9430    1.2166 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6919   -1.2499    1.8360 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8976   -0.5056   -2.2872 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3964   -2.0687   -1.6754 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6227   -0.7251   -2.0729 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0989   -1.3870    1.2256 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8027   -2.4912    0.0522 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2839   -3.2108    1.5746 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5143   -2.1617    2.7715 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2411   -0.6126    2.7535 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7519   -2.9064    3.0573 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2921    0.3595    1.7575 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6939    0.0771   -0.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8642   -1.2031    1.1558 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5221   -1.8074   -1.2054 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8470   -2.6723    0.2787 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1934   -2.7491   -0.2983 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2761    0.6382   -0.6891 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9291    0.7783    2.0676 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5199    1.5854    1.6483 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6956    3.1755    1.2846 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3767    2.6357   -0.3330 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  2  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 15 18  1  0
 18 19  1  0
 18 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
  8 24  1  0
 24 25  1  6
 24 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 30 32  1  0
 30 33  1  0
 33 34  1  0
 34 35  1  0
 11  5  1  0
 22 13  1  0
 33 24  1  0
 35  7  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
  2 39  1  6
  3 40  1  0
  3 41  1  0
  4 42  1  0
  6 43  1  0
 10 44  1  0
 13 45  1  1
 15 46  1  1
 16 47  1  0
 16 48  1  0
 17 49  1  0
 18 50  1  6
 19 51  1  0
 20 52  1  1
 21 53  1  0
 22 54  1  1
 23 55  1  0
 25 56  1  0
 25 57  1  0
 25 58  1  0
 26 59  1  0
 26 60  1  0
 27 61  1  0
 27 62  1  0
 28 63  1  1
 29 64  1  0
 31 65  1  0
 31 66  1  0
 31 67  1  0
 32 68  1  0
 32 69  1  0
 32 70  1  0
 33 71  1  6
 34 72  1  0
 34 73  1  0
 35 74  1  0
 35 75  1  0
M  END


  Mrv1533004161513452D          

 35 38  0  0  0  0            999 V2000
    0.7954   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7954   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5206    0.1716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6021    0.7019    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9829   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -2.9684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -2.9684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -5.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -5.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -3.6829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 10 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
  7 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
  5 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 27 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 25 34  1  0  0  0  0
 34 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0176647

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CO)C1=CC2=C(C(O)=C1OC1OC(CO)C(O)C(O)C1O)C1(C)CCC(O)C(C)(C)C1CC2

> <INCHI_IDENTIFIER>
InChI=1S/C26H40O9/c1-12(10-27)14-9-13-5-6-16-25(2,3)17(29)7-8-26(16,4)18(13)20(31)23(14)35-24-22(33)21(32)19(30)15(11-28)34-24/h9,12,15-17,19,21-22,24,27-33H,5-8,10-11H2,1-4H3

> <INCHI_KEY>
IACPYMAYLYRWCN-UHFFFAOYSA-N

> <FORMULA>
C26H40O9

> <MOLECULAR_WEIGHT>
496.597

> <EXACT_MASS>
496.267232868

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
53.31528959172664

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
1.03

> <JCHEM_LOGP>
1.092337438666666

> <ALOGPS_LOGS>
-2.69

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.20694017971763

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.52935421355488

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6649272970723663

> <JCHEM_POLAR_SURFACE_AREA>
160.07

> <JCHEM_REFRACTIVITY>
127.20019999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.00e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0       1.485  -2.874   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.255  -1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.485  -0.206   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.255   1.127   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.795  -1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.565  -0.206   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.105  -0.206   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.875   1.127   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.415   1.127   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.185  -0.206   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.725  -0.206   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.172   0.320   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.457   1.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.495  -1.540   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      13.035  -1.540   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      10.725  -2.874   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.185  -2.874   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.415  -1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.645  -2.874   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.875  -1.540   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.105  -2.874   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       6.875  -4.207   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       4.565  -2.874   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       3.795  -4.207   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       4.565  -5.541   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.105  -5.541   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       6.875  -6.875   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.415  -6.875   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       9.185  -5.541   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       6.105  -8.208   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       6.875  -9.542   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       4.565  -8.208   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       3.795  -9.542   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       3.795  -6.875   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       2.255  -6.875   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    5                                                  
CONECT    3    2    4                                                       
CONECT    4    3                                                            
CONECT    5    2    6   23                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   20                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   18                                                  
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   11   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   10   19   20                                             
CONECT   19   18                                                            
CONECT   20   18    7   21                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21    5   24                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   34                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   30                                                  
CONECT   28   27   29                                                       
CONECT   29   28                                                            
CONECT   30   27   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   25   35                                                  
CONECT   35   34                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₄₀O₉

Average Mass

496.5970 Da

Monoisotopic Mass

496.26723 Da

IUPAC Name

2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CC(CO)C1=CC2=C(C(O)=C1OC1OC(CO)C(O)C(O)C1O)C1(C)CCC(O)C(C)(C)C1CC2

InChI Identifier

InChI=1S/C26H40O9/c1-12(10-27)14-9-13-5-6-16-25(2,3)17(29)7-8-26(16,4)18(13)20(31)23(14)35-24-22(33)21(32)19(30)15(11-28)34-24/h9,12,15-17,19,21-22,24,27-33H,5-8,10-11H2,1-4H3

InChI Key

IACPYMAYLYRWCN-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Clerodendrum bungei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene glycosides. These are diterpenoids in which an isoprene unit is glycosylated.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Diterpene glycosides

Alternative Parents

Substituents

Diterpene glycoside
Abietane diterpenoid
Diterpenoid
Phenolic glycoside
Fatty acyl glycoside
Fatty acyl glycoside of mono- or disaccharide
Hydrophenanthrene
Phenanthrene
Alkyl glycoside
Glycosyl compound
O-glycosyl compound
Tetralin
1-hydroxy-4-unsubstituted benzenoid
Fatty acyl
Benzenoid
Monosaccharide
Oxane
Cyclic alcohol
Secondary alcohol
Organoheterocyclic compound
Acetal
Oxacycle
Polyol
Primary alcohol
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.03	ALOGPS
logP	1.09	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	10.53	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	160.07 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	127.2 m³·mol⁻¹	ChemAxon
Polarizability	53.32 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74342783

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0176647)

MOL for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D MOL for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D SDF for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D-SDF for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

PDB for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D PDB for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

SMILES for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

INCHI for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

Structure for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D Structure for NP0176647 (2-{[4,7-dihydroxy-2-(1-hydroxypropan-2-yl)-4b,8,8-trimethyl-5,6,7,8a,9,10-hexahydrophenanthren-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)