NP-MRD: Showing NP-Card for 16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one (NP0175902)

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Record Information

Version

2.0

Created at

2022-09-03 13:28:37 UTC

Updated at

2022-09-03 13:28:38 UTC

NP-MRD ID

NP0175902

Secondary Accession Numbers

None

Natural Product Identification

Common Name

16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one

Description

16-Chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3H,6H,9H,10H,13H,14H,18H,18aH-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. 16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one is found in Aster tataricus. 16-Chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3H,6H,9H,10H,13H,14H,18H,18aH-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004261502162D          

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M  END

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  Mrv1533004261502162D          

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  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 24 27  1  0  0  0  0
 27 28  1  0  0  0  0
  3 28  1  0  0  0  0
 28 29  2  0  0  0  0
 20 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 30 35  1  0  0  0  0
 15 36  1  0  0  0  0
 36 37  1  0  0  0  0
 36 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0175902

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC1NC(=O)C2CC=C(Cl)N2C(=O)C(NC(=O)CC(NC(=O)C(CO)NC1=O)C1=CC=CC=C1)C(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C25H32ClN5O7/c1-3-15-22(35)29-17(12-32)23(36)28-16(14-7-5-4-6-8-14)11-20(34)30-21(13(2)33)25(38)31-18(24(37)27-15)9-10-19(31)26/h4-8,10,13,15-18,21,32-33H,3,9,11-12H2,1-2H3,(H,27,37)(H,28,36)(H,29,35)(H,30,34)

> <INCHI_KEY>
MBBZPVISCABKRR-UHFFFAOYSA-N

> <FORMULA>
C25H32ClN5O7

> <MOLECULAR_WEIGHT>
550.01

> <EXACT_MASS>
549.1990261

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
53.71969592311092

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
16-chloro-3-ethyl-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-1H,2H,3H,4H,5H,6H,7H,8H,9H,10H,11H,12H,13H,14H,18H,18aH-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecane-1,4,7,11,14-pentone

> <ALOGPS_LOGP>
0.35

> <JCHEM_LOGP>
-1.2887729840000002

> <ALOGPS_LOGS>
-3.27

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.789235657258777

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.202773506298957

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8443981388717425

> <JCHEM_POLAR_SURFACE_AREA>
177.17

> <JCHEM_REFRACTIVITY>
145.63789999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.99e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
16-chloro-3-ethyl-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-2H,3H,5H,6H,8H,9H,10H,12H,13H,18H,18aH-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecane-1,4,7,11,14-pentone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0       4.546  -3.180   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.614  -1.954   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.209  -0.534   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0       3.277   0.692   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       1.749   0.497   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.154  -0.923   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.817   1.723   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.718   1.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.071   3.349   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.245   4.148   0.000  0.00  0.00           C+0
HETATM   11 Cl   UNK     0       0.373   5.683   0.000  0.00  0.00          Cl+0
HETATM   12  N   UNK     0       1.412   3.143   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       2.940   3.338   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.872   2.112   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       3.535   4.758   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       5.063   4.953   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       5.658   6.373   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.726   7.599   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       7.186   6.567   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.118   5.342   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       7.523   3.921   0.000  0.00  0.00           N+0
HETATM   22  C   UNK     0       8.455   2.696   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       9.983   2.890   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       7.860   1.275   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.792   0.050   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      10.320   0.244   0.000  0.00  0.00           O+0
HETATM   27  N   UNK     0       6.332   1.081   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0       5.737  -0.339   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       6.669  -1.565   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       9.646   5.536   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.241   6.956   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      11.769   7.151   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.701   5.925   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.106   4.505   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      10.578   4.310   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.603   5.984   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       1.075   5.789   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       3.198   7.404   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   28                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    7   13                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   36                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   30                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   27                                                  
CONECT   25   24   26                                                       
CONECT   26   25                                                            
CONECT   27   24   28                                                       
CONECT   28   27    3   29                                                  
CONECT   29   28                                                            
CONECT   30   20   31   35                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   30                                                       
CONECT   36   15   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₂ClN₅O₇

Average Mass

550.0100 Da

Monoisotopic Mass

549.19903 Da

IUPAC Name

16-chloro-3-ethyl-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-1H,2H,3H,4H,5H,6H,7H,8H,9H,10H,11H,12H,13H,14H,18H,18aH-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecane-1,4,7,11,14-pentone

Traditional Name

16-chloro-3-ethyl-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-2H,3H,5H,6H,8H,9H,10H,12H,13H,18H,18aH-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecane-1,4,7,11,14-pentone

CAS Registry Number

Not Available

SMILES

CCC1NC(=O)C2CC=C(Cl)N2C(=O)C(NC(=O)CC(NC(=O)C(CO)NC1=O)C1=CC=CC=C1)C(C)O

InChI Identifier

InChI=1S/C25H32ClN5O7/c1-3-15-22(35)29-17(12-32)23(36)28-16(14-7-5-4-6-8-14)11-20(34)30-21(13(2)33)25(38)31-18(24(37)27-15)9-10-19(31)26/h4-8,10,13,15-18,21,32-33H,3,9,11-12H2,1-2H3,(H,27,37)(H,28,36)(H,29,35)(H,30,34)

InChI Key

MBBZPVISCABKRR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aster tataricus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Hybrid peptides

Direct Parent

Hybrid peptides

Alternative Parents

Substituents

Cyclic hybrid peptide
Alpha-oligopeptide
Macrolactam
Beta amino acid or derivatives
Alpha-amino acid or derivatives
Monocyclic benzene moiety
Benzenoid
Pyrroline
Tertiary carboxylic acid amide
Carboxamide group
Ketene acetal or derivatives
Lactam
Secondary alcohol
Secondary carboxylic acid amide
Organoheterocyclic compound
Azacycle
Vinyl halide
Vinyl chloride
Chloroalkene
Carboxylic acid derivative
Haloalkene
Organopnictogen compound
Organohalogen compound
Hydrocarbon derivative
Organochloride
Organic oxide
Organonitrogen compound
Organooxygen compound
Carbonyl group
Organic nitrogen compound
Primary alcohol
Alcohol
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.35	ALOGPS
logP	-1.3	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	10.2	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	177.17 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	145.64 m³·mol⁻¹	ChemAxon
Polarizability	53.72 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one (NP0175902)

MOL for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

3D MOL for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

3D SDF for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

3D-SDF for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

PDB for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

3D PDB for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

SMILES for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

INCHI for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

Structure for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)

3D Structure for NP0175902 (16-chloro-3-ethyl-1,4,7,11-tetrahydroxy-13-(1-hydroxyethyl)-6-(hydroxymethyl)-9-phenyl-3h,6h,9h,10h,13h,18h,18ah-pyrrolo[1,2-d]1,4,7,10,13-pentaazacyclohexadecan-14-one)