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Record Information
Version2.0
Created at2022-09-03 12:15:35 UTC
Updated at2022-09-03 12:15:35 UTC
NP-MRD IDNP0174909
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1s,7r,8s,9ar,11ar)-5,7,8-trihydroxy-9a,11a-dimethyl-1-[(2r,3r)-2,3,6-trihydroxy-6-methylheptan-2-yl]-1h,2h,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-4-one
DescriptionCalonysterone belongs to the class of organic compounds known as hydroxy bile acids, alcohols and derivatives. These are bile acids, alcohols or derivatives bearing at least hydroxyl group. Thus, calonysterone is considered to be a sterol. (1s,7r,8s,9ar,11ar)-5,7,8-trihydroxy-9a,11a-dimethyl-1-[(2r,3r)-2,3,6-trihydroxy-6-methylheptan-2-yl]-1h,2h,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-4-one is found in Vitex canescens and Vitex glabrata. (1s,7r,8s,9ar,11ar)-5,7,8-trihydroxy-9a,11a-dimethyl-1-[(2r,3r)-2,3,6-trihydroxy-6-methylheptan-2-yl]-1h,2h,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-4-one was first documented in 2002 (PMID: 12444704). Based on a literature review a significant number of articles have been published on Calonysterone (PMID: 34909058) (PMID: 26930982) (PMID: 28886518) (PMID: 28419924) (PMID: 26465254) (PMID: 25509296).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H40O7
Average Mass476.6100 Da
Monoisotopic Mass476.27740 Da
IUPAC Name(2R,4S,5R,14S,15R)-4,5,8-trihydroxy-2,15-dimethyl-14-[(2R,3R)-2,3,6-trihydroxy-6-methylheptan-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-1(10),7,11-trien-9-one
Traditional Name(2R,4S,5R,14S,15R)-4,5,8-trihydroxy-2,15-dimethyl-14-[(2R,3R)-2,3,6-trihydroxy-6-methylheptan-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-1(10),7,11-trien-9-one
CAS Registry NumberNot Available
SMILES
CC(C)(O)CC[C@@H](O)[C@](C)(O)[C@H]1CC=C2C3=C(CC[C@]12C)[C@@]1(C)C[C@H](O)[C@H](O)CC1=C(O)C3=O
InChI Identifier
InChI=1S/C27H40O7/c1-24(2,33)10-9-20(30)27(5,34)19-7-6-14-21-15(8-11-25(14,19)3)26(4)13-18(29)17(28)12-16(26)22(31)23(21)32/h6,17-20,28-31,33-34H,7-13H2,1-5H3/t17-,18+,19+,20-,25+,26-,27-/m1/s1
InChI KeyXAKKXZNYERXAIY-HTYOSDJUSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Vitex canescensLOTUS Database
Vitex glabrataLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydroxy bile acids, alcohols and derivatives. These are bile acids, alcohols or derivatives bearing at least hydroxyl group.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassBile acids, alcohols and derivatives
Direct ParentHydroxy bile acids, alcohols and derivatives
Alternative Parents
Substituents
  • Hexahydroxy bile acid, alcohol, or derivatives
  • Cholesterol-skeleton
  • Cholestane-skeleton
  • 25-hydroxysteroid
  • Hydroxy bile acid, alcohol, or derivatives
  • 22-hydroxysteroid
  • 20-hydroxysteroid
  • 3-hydroxy-delta-5-steroid
  • 3-hydroxysteroid
  • 7-oxosteroid
  • 3-beta-hydroxysteroid
  • 3-beta-hydroxy-delta-5-steroid
  • Oxosteroid
  • 2-hydroxysteroid
  • Hydroxysteroid
  • 6-hydroxysteroid
  • Delta-5-steroid
  • Tertiary alcohol
  • Cyclic alcohol
  • Secondary alcohol
  • Ketone
  • Polyol
  • Enol
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Alcohol
  • Organic oxide
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.64ALOGPS
logP0.5ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)9.47ChemAxon
pKa (Strongest Basic)-2.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area138.45 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity130.93 m³·mol⁻¹ChemAxon
Polarizability53.47 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID58924788
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101281312
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Suksamrarn A, Kumpun S, Yingyongnarongkul BE: Ecdysteroids of Vitex scabra stem bark. J Nat Prod. 2002 Nov;65(11):1690-2. doi: 10.1021/np020199o. [PubMed:12444704 ]
  2. Alamri MA, Altharawi A, Alabbas AB, Alossaimi MA, Alqahtani SM: Structure-based virtual screening and molecular dynamics of phytochemicals derived from Saudi medicinal plants to identify potential COVID-19 therapeutics. Arab J Chem. 2020 Sep;13(9):7224-7234. doi: 10.1016/j.arabjc.2020.08.004. Epub 2020 Aug 9. [PubMed:34909058 ]
  3. Yin W, Song ZR, Liu JQ, Zhang GS: [Chemical Constituents of Paris polyphylla var. chinensis Aerial Parts]. Zhong Yao Cai. 2015 Sep;38(9):1875-8. [PubMed:26930982 ]
  4. Issaadi HM, Hunyadi A, Nemeth K: Capillary electrophoresis study on the base-catalyzed formation of bioactive oxidized metabolites of 20-hydroxyecdysone. J Pharm Biomed Anal. 2017 Nov 30;146:188-194. doi: 10.1016/j.jpba.2017.08.022. Epub 2017 Aug 26. [PubMed:28886518 ]
  5. Issaadi HM, Tsai YC, Chang FR, Hunyadi A: Centrifugal partition chromatography in the isolation of minor ecdysteroids from Cyanotis arachnoidea. J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Jun 1;1054:44-49. doi: 10.1016/j.jchromb.2017.03.043. Epub 2017 Apr 8. [PubMed:28419924 ]
  6. Csabi J, Hsieh TJ, Hasanpour F, Martins A, Kele Z, Gati T, Simon A, Toth G, Hunyadi A: Oxidized Metabolites of 20-Hydroxyecdysone and Their Activity on Skeletal Muscle Cells: Preparation of a Pair of Desmotropes with Opposite Bioactivities. J Nat Prod. 2015 Oct 23;78(10):2339-45. doi: 10.1021/acs.jnatprod.5b00249. Epub 2015 Oct 14. [PubMed:26465254 ]
  7. Liu XX, Wang L, Long Y, Sun LL, Wang Q: [Chemical constituents from Paris mairei]. Zhongguo Zhong Yao Za Zhi. 2014 Aug;39(16):3107-11. [PubMed:25509296 ]
  8. LOTUS database [Link]