NP-MRD: Showing NP-Card for (2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol (NP0174879)

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Record Information

Version

2.0

Created at

2022-09-03 12:13:36 UTC

Updated at

2022-09-03 12:13:36 UTC

NP-MRD ID

NP0174879

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol

Description

(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,6R)-6-{[(2R,5S,10R,11S,14S,15R)-11-hydroxy-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-7-en-5-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton. (2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol is found in Hemidesmus indicus. Based on a literature review very few articles have been published on (2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,6R)-6-{[(2R,5S,10R,11S,14S,15R)-11-hydroxy-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-7-en-5-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032214132D          

 45 50  0  0  1  0            999 V2000
   11.3814    5.7941    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5693    5.6489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.2890    4.8730    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.8208    4.2423    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.6329    4.3875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5405    3.4663    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.0723    2.8356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7284    3.3211    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.1966    3.9518    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.3844    3.8066    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1041    3.0307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.6360    2.4000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.4481    2.5452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3557    1.6241    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5435    1.4789    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.2632    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4511    0.5577    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1708   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3587   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269    0.2673    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5466   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1072    1.0432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5754    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7633    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    0.7528    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0148    0.1221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7345   -0.6539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9224   -0.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3905   -0.1684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0307   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5660   -0.1416    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0596   -0.7929    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3705   -1.5571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2424   -0.6800    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0195    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6708    0.6076    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8685    1.4085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0117    2.1096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2920    2.8855    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7602    3.5162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0405    4.2921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4769    4.7278    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9450    5.3585    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  1  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 17 16  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 25 26  1  0  0  0  0
 20 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  1  0  0  0
 32 33  1  0  0  0  0
 32 34  1  6  0  0  0
 31 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 25 37  1  0  0  0  0
 29 37  1  0  0  0  0
 37 38  1  1  0  0  0
 22 39  1  0  0  0  0
 17 39  1  0  0  0  0
 15 40  1  0  0  0  0
 40 41  1  0  0  0  0
 11 41  1  0  0  0  0
 41 42  1  1  0  0  0
 42 43  1  0  0  0  0
  9 44  1  0  0  0  0
  3 44  1  0  0  0  0
 44 45  1  6  0  0  0
M  END

     RDKit          3D

103108  0  0  0  0  0  0  0  0999 V2000
   10.5807    2.2945   -2.0400 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5291    2.6821   -1.2287 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0728    1.5967   -0.4764 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.2266    1.9163    0.9715 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.4693    3.0656    1.2557 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5576    0.7686    1.7421 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.8029    1.0281    3.2079 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2084    0.8861    1.5190 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8387    0.6159    0.1827 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4965    0.9886    0.1138 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6328   -0.0743   -0.1036 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7183    0.2584   -1.2526 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5029    0.1422   -2.5820 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6118   -0.5776   -1.3046 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7457   -0.3311   -0.2975 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0588   -1.4278    0.1730 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3033   -1.4224    0.0548 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8303   -2.4487   -0.9292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2527   -1.9505   -1.2556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1298   -2.0680   -0.0325 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2073   -3.5009    0.4602 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4850   -1.2861    1.0776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1701   -0.3944    1.7800 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5967   -0.0583    1.5805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2752   -1.1891    0.9001 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4981   -1.5677   -0.3408 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5774   -0.4286   -1.3045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0053   -0.2637   -1.7600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9912   -0.1119   -0.6306 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.3211   -0.6053   -1.2276 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1846    1.2894   -0.1981 C   0  0  1  0  0  0  0  0  0  0  0  0
   -8.2836    2.0450   -0.9203 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.3350    3.4764   -0.3548 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5085    1.4868   -0.5510 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4439    1.2131    1.2801 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4681   -0.2517    1.6634 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7081   -0.9530    0.5493 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.3111   -2.1942    0.4099 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0476   -1.5684    1.3390 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4211    0.4415    0.8123 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7587   -0.1786    1.1496 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5329   -1.5378    1.3668 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9293   -1.9245    2.6451 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6285    1.3740   -0.8221 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.6420    0.5796   -1.9990 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.3051    1.4858   -2.7608 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0050    3.1835   -2.5188 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3563    1.8553   -1.3698 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.1776   -1.0349   -0.2292 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4260    1.3281   -1.2243 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2178   -0.6838   -2.4521 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8036    0.0271   -3.4248 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0679    1.0702   -2.7730 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9520    0.3709   -0.6974 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5887   -0.4468   -0.3948 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.5940   -2.5351   -2.1070 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2785   -3.7400    0.6056 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.0828   -0.7803   -0.4434 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1269   -1.6388   -1.6493 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.7284   -3.0086    2.7505 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0064   -1.7691    2.8423 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3425   -1.4034    3.4320 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1607    2.3313   -1.1525 H   0  0  0  0  0  0  0  0  0  0  0  0
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 43 42  1  0
 42 41  1  0
 41 40  1  0
 40 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  1
 20 26  1  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  1  6
 29 31  1  0
 31 35  1  0
 35 36  1  0
 36 37  1  0
 37 38  1  6
 37 25  1  0
 25 24  1  0
 24 23  1  0
 23 22  2  0
 22 39  1  0
 31 32  1  0
 32 33  1  0
 32 34  1  0
 15 14  1  0
 14 12  1  0
 12 13  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  6  1  0
  6  7  1  0
  6  4  1  0
  4  5  1  0
  4  3  1  0
  3  2  1  0
  2  1  1  0
  3 44  1  0
 44 45  1  0
 11 41  1  0
 44  9  1  0
 39 17  1  0
 22 20  1  0
 25 26  1  0
 37 29  1  0
 43 99  1  0
 43100  1  0
 43101  1  0
 41 98  1  1
 40 96  1  0
 40 97  1  0
 15 62  1  6
 17 63  1  6
 18 64  1  0
 18 65  1  0
 19 66  1  0
 19 67  1  0
 21 68  1  0
 21 69  1  0
 21 70  1  0
 26 75  1  6
 27 76  1  0
 27 77  1  0
 28 78  1  0
 28 79  1  0
 30 80  1  0
 30 81  1  0
 30 82  1  0
 31 83  1  1
 35 89  1  0
 35 90  1  0
 36 91  1  0
 36 92  1  0
 38 93  1  0
 25 74  1  1
 24 72  1  0
 24 73  1  0
 23 71  1  0
 39 94  1  0
 39 95  1  0
 32 84  1  6
 33 85  1  0
 33 86  1  0
 33 87  1  0
 34 88  1  0
 12 58  1  1
 13 59  1  0
 13 60  1  0
 13 61  1  0
 11 57  1  6
  9 56  1  6
  6 52  1  6
  7 53  1  0
  7 54  1  0
  7 55  1  0
  4 50  1  1
  5 51  1  0
  3 49  1  6
  1 46  1  0
  1 47  1  0
  1 48  1  0
 44102  1  6
 45103  1  0
M  END


  Mrv1652309032214132D          

 45 50  0  0  1  0            999 V2000
   11.3814    5.7941    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5693    5.6489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.2890    4.8730    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.8208    4.2423    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.6329    4.3875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5405    3.4663    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.0723    2.8356    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7284    3.3211    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.1966    3.9518    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.3844    3.8066    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.1041    3.0307    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.6360    2.4000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.4481    2.5452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3557    1.6241    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5435    1.4789    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.2632    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4511    0.5577    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1708   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3587   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269    0.2673    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5466   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1072    1.0432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5754    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7633    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    0.7528    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0148    0.1221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7345   -0.6539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9224   -0.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3905   -0.1684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0307   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5660   -0.1416    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0596   -0.7929    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3705   -1.5571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2424   -0.6800    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0195    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6708    0.6076    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8685    1.4085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0117    2.1096    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2920    2.8855    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7602    3.5162    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0405    4.2921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4769    4.7278    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.9450    5.3585    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  1  0  0  0
  4  6  1  0  0  0  0
  6  7  1  1  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 17 16  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 25 26  1  0  0  0  0
 20 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  1  0  0  0
 32 33  1  0  0  0  0
 32 34  1  6  0  0  0
 31 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 25 37  1  0  0  0  0
 29 37  1  0  0  0  0
 37 38  1  1  0  0  0
 22 39  1  0  0  0  0
 17 39  1  0  0  0  0
 15 40  1  0  0  0  0
 40 41  1  0  0  0  0
 11 41  1  0  0  0  0
 41 42  1  1  0  0  0
 42 43  1  0  0  0  0
  9 44  1  0  0  0  0
  3 44  1  0  0  0  0
 44 45  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0174879

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@H]1C[C@H](O[C@H]2CC[C@]3(C)C4CC[C@]5(C)[C@H](CC[C@]5(O)[C@@H]4CC=C3C2)[C@H](C)O)O[C@H](C)[C@H]1O[C@@H]1O[C@H](C)[C@H](O)[C@H](OC)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C35H58O10/c1-18(36)23-12-15-35(39)25-9-8-21-16-22(10-13-33(21,4)24(25)11-14-34(23,35)5)44-27-17-26(40-6)30(20(3)42-27)45-32-29(38)31(41-7)28(37)19(2)43-32/h8,18-20,22-32,36-39H,9-17H2,1-7H3/t18-,19+,20+,22-,23+,24?,25+,26+,27-,28-,29+,30+,31-,32-,33-,34+,35-/m0/s1

> <INCHI_KEY>
IPWUXBATRUGPLD-HFLIMNPFSA-N

> <FORMULA>
C35H58O10

> <MOLECULAR_WEIGHT>
638.839

> <EXACT_MASS>
638.402998068

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
103

> <JCHEM_AVERAGE_POLARIZABILITY>
73.07322708328272

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,6R)-6-{[(2R,5S,10R,11S,14S,15R)-11-hydroxy-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol

> <ALOGPS_LOGP>
2.53

> <JCHEM_LOGP>
3.031551328333334

> <ALOGPS_LOGS>
-4.55

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.2458535216579

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.289786883449505

> <JCHEM_PKA_STRONGEST_BASIC>
-2.690494782402209

> <JCHEM_POLAR_SURFACE_AREA>
136.3

> <JCHEM_REFRACTIVITY>
165.9668

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.78e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,6R)-6-{[(2R,5S,10R,11S,14S,15R)-11-hydroxy-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      21.245  10.816   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      19.729  10.545   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      19.206   9.096   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      20.199   7.919   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      21.715   8.190   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      19.676   6.471   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      20.668   5.293   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      18.160   6.199   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      17.167   7.377   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      15.651   7.106   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      15.128   5.657   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      16.120   4.480   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      17.636   4.751   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      15.597   3.032   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      14.081   2.761   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      13.558   1.312   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      12.042   1.041   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      11.519  -0.407   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.003  -0.678   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.010   0.499   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.487  -0.949   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.533   1.947   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.541   3.125   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.025   2.854   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.502   1.405   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.494   0.228   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.971  -1.221   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.455  -1.492   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.462  -0.314   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.791  -1.700   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.923  -0.264   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       1.978  -1.480   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       2.558  -2.907   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       0.452  -1.269   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       2.495   1.215   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       3.770   2.079   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.986   1.134   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       5.355   2.629   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      11.049   2.218   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      13.089   3.938   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      13.612   5.386   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      12.619   6.564   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      13.142   8.012   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      17.690   8.825   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      16.697  10.002   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   44                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   44                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   41                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   40                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   39                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22   26                                             
CONECT   21   20                                                            
CONECT   22   20   23   39                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   37                                                  
CONECT   26   25   20   27                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31   37                                             
CONECT   30   29                                                            
CONECT   31   29   32   35                                                  
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   31   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   25   29   38                                             
CONECT   38   37                                                            
CONECT   39   22   17                                                       
CONECT   40   15   41                                                       
CONECT   41   40   11   42                                                  
CONECT   42   41   43                                                       
CONECT   43   42                                                            
CONECT   44    9    3   45                                                  
CONECT   45   44                                                            
MASTER        0    0    0    0    0    0    0    0   45    0  100    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₅H₅₈O₁₀

Average Mass

638.8390 Da

Monoisotopic Mass

638.40300 Da

IUPAC Name

(2S,3R,4S,5S,6R)-2-{[(2R,3R,4R,6R)-6-{[(2R,5S,10R,11S,14S,15R)-11-hydroxy-14-[(1S)-1-hydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol

Traditional Name

CAS Registry Number

Not Available

SMILES

CO[C@@H]1C[C@H](O[C@H]2CC[C@]3(C)C4CC[C@]5(C)[C@H](CC[C@]5(O)[C@@H]4CC=C3C2)[C@H](C)O)O[C@H](C)[C@H]1O[C@@H]1O[C@H](C)[C@H](O)[C@H](OC)[C@H]1O

InChI Identifier

InChI=1S/C35H58O10/c1-18(36)23-12-15-35(39)25-9-8-21-16-22(10-13-33(21,4)24(25)11-14-34(23,35)5)44-27-17-26(40-6)30(20(3)42-27)45-32-29(38)31(41-7)28(37)19(2)43-32/h8,18-20,22-32,36-39H,9-17H2,1-7H3/t18-,19+,20+,22-,23+,24?,25+,26+,27-,28-,29+,30+,31-,32-,33-,34+,35-/m0/s1

InChI Key

IPWUXBATRUGPLD-HFLIMNPFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hemidesmus indicus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal glycosides

Alternative Parents

Substituents

Steroidal glycoside
Pregnane-skeleton
20-hydroxysteroid
Hydroxysteroid
14-hydroxysteroid
Delta-5-steroid
O-glycosyl compound
Glycosyl compound
Disaccharide
Oxane
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Acetal
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.53	ALOGPS
logP	3.03	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Acidic)	12.29	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	136.3 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	165.97 m³·mol⁻¹	ChemAxon
Polarizability	73.07 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163186609

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol (NP0174879)

MOL for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

3D MOL for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

3D SDF for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

3D-SDF for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

PDB for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

3D PDB for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

SMILES for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

INCHI for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

Structure for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)

3D Structure for NP0174879 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4r,6r)-6-{[(1s,3as,3br,7s,9ar,11ar)-3a-hydroxy-1-[(1s)-1-hydroxyethyl]-9a,11a-dimethyl-1h,2h,3h,3bh,4h,6h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-7-yl]oxy}-4-methoxy-2-methyloxan-3-yl]oxy}-4-methoxy-6-methyloxane-3,5-diol)