Np mrd loader

Record Information
Version2.0
Created at2022-09-03 12:06:00 UTC
Updated at2022-09-03 12:06:00 UTC
NP-MRD IDNP0174778
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2s,3r,6r,11'r,15'r)-3-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-4'-hydroxy-6-methyl-12',16'-dioxaspiro[oxane-2,17'-tetracyclo[8.7.0.0³,⁸.0¹¹,¹⁵]heptadecane]-1'(10'),3',5',7'-tetraene-2',4,9',13'-tetrone
DescriptionAuricin belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. Auricin is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. (2s,3r,6r,11'r,15'r)-3-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-4'-hydroxy-6-methyl-12',16'-dioxaspiro[oxane-2,17'-tetracyclo[8.7.0.0³,⁸.0¹¹,¹⁵]heptadecane]-1'(10'),3',5',7'-tetraene-2',4,9',13'-tetrone is found in Kitasatospora aureofaciens. (2s,3r,6r,11'r,15'r)-3-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-4'-hydroxy-6-methyl-12',16'-dioxaspiro[oxane-2,17'-tetracyclo[8.7.0.0³,⁸.0¹¹,¹⁵]heptadecane]-1'(10'),3',5',7'-tetraene-2',4,9',13'-tetrone was first documented in 2016 (PMID: 26685675). Based on a literature review a small amount of articles have been published on auricin (PMID: 35269603) (PMID: 31349574) (PMID: 29496832) (PMID: 29155332).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC28H31NO10
Average Mass541.5530 Da
Monoisotopic Mass541.19480 Da
IUPAC Name(2S,3R,6R,11'R,15'R)-3-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-4'-hydroxy-6-methyl-12',16'-dioxaspiro[oxane-2,17'-tetracyclo[8.7.0.0^{3,8}.0^{11,15}]heptadecane]-1'(10'),3',5',7'-tetraene-2',4,9',13'-tetrone
Traditional Name(2S,3R,6R,11'R,15'R)-3-{[5-(dimethylamino)-6-methyloxan-2-yl]oxy}-4'-hydroxy-6-methyl-12',16'-dioxaspiro[oxane-2,17'-tetracyclo[8.7.0.0^{3,8}.0^{11,15}]heptadecane]-1'(10'),3',5',7'-tetraene-2',4,9',13'-tetrone
CAS Registry NumberNot Available
SMILES
C[C@@H]1CC(=O)[C@@H](OC2CCC(C(C)O2)N(C)C)[C@]2(O[C@@H]3CC(=O)O[C@@H]3C3=C2C(=O)C2=C(O)C=CC=C2C3=O)O1
InChI Identifier
InChI=1S/C28H31NO10/c1-12-10-17(31)27(37-20-9-8-15(29(3)4)13(2)35-20)28(38-12)23-22(26-18(39-28)11-19(32)36-26)24(33)14-6-5-7-16(30)21(14)25(23)34/h5-7,12-13,15,18,20,26-27,30H,8-11H2,1-4H3/t12-,13?,15?,18-,20?,26+,27-,28+/m1/s1
InChI KeyDIESPMSGQPRWLG-VLKAYIDRSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Kitasatospora aureofaciensLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentAminoglycosides
Alternative Parents
Substituents
  • Aminoglycoside core
  • Benzoisochromanequinone
  • Naphthopyranone
  • Naphthopyran
  • Naphthoquinone
  • Naphthalene
  • Furopyran
  • Aryl ketone
  • Quinone
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Ketal
  • Pyranone
  • Benzenoid
  • Pyran
  • Oxane
  • Gamma butyrolactone
  • Vinylogous acid
  • Tetrahydrofuran
  • Furan
  • Cyclic ketone
  • Tertiary aliphatic amine
  • Tertiary amine
  • Lactone
  • Ketone
  • Carboxylic acid ester
  • Amino acid or derivatives
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Acetal
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Carbonyl group
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.24ALOGPS
logP2.39ChemAxon
logS-2.7ALOGPS
pKa (Strongest Acidic)7.69ChemAxon
pKa (Strongest Basic)8.35ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area137.9 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity134.26 m³·mol⁻¹ChemAxon
Polarizability54.52 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00001845
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound154573709
PDB IDNot Available
ChEBI ID156301
Good Scents IDNot Available
References
General References
  1. Novakova R, Mingyar E, Feckova L, Homerova D, Csolleiova D, Rezuchova B, Sevcikova B, Javorova R, Kormanec J: A New Family of Transcriptional Regulators Activating Biosynthetic Gene Clusters for Secondary Metabolites. Int J Mol Sci. 2022 Feb 23;23(5):2455. doi: 10.3390/ijms23052455. [PubMed:35269603 ]
  2. Matulova M, Feckova L, Novakova R, Mingyar E, Csolleiova D, Zduriencikova M, Sedlak J, Patoprsty V, Sasinkova V, Uhliarikova I, Sevcikova B, Rezuchova B, Homerova D, Kormanec J: A Structural Analysis of the Angucycline-Like Antibiotic Auricin from Streptomyces lavendulae Subsp. Lavendulae CCM 3239 Revealed Its High Similarity to Griseusins. Antibiotics (Basel). 2019 Jul 25;8(3):102. doi: 10.3390/antibiotics8030102. [PubMed:31349574 ]
  3. Busche T, Novakova R, Al'Dilaimi A, Homerova D, Feckova L, Rezuchova B, Mingyar E, Csolleiova D, Bekeova C, Winkler A, Sevcikova B, Kalinowski J, Kormanec J, Ruckert C: Complete Genome Sequence of Streptomyces lavendulae subsp. lavendulae CCM 3239 (Formerly "Streptomyces aureofaciens CCM 3239"), a Producer of the Angucycline-Type Antibiotic Auricin. Genome Announc. 2018 Mar 1;6(9):e00103-18. doi: 10.1128/genomeA.00103-18. [PubMed:29496832 ]
  4. Mingyar E, Novakova R, Knirschova R, Feckova L, Bekeova C, Kormanec J: Unusual features of the large linear plasmid pSA3239 from Streptomyces aureofaciens CCM 3239. Gene. 2018 Feb 5;642:313-323. doi: 10.1016/j.gene.2017.11.046. Epub 2017 Nov 17. [PubMed:29155332 ]
  5. Bekeova C, Rehakova A, Feckova L, Vlckova S, Novakova R, Mingyar E, Kormanec J: Characterisation of the genes involved in the biosynthesis and attachment of the aminodeoxysugar D-forosamine in the auricin gene cluster of Streptomyces aureofaciens CCM3239. Appl Microbiol Biotechnol. 2016 Apr;100(7):3177-95. doi: 10.1007/s00253-015-7214-9. Epub 2015 Dec 19. [PubMed:26685675 ]
  6. LOTUS database [Link]