NP-MRD: Showing NP-Card for (3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione (NP0173434)

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Record Information

Version

2.0

Created at

2022-09-03 10:34:05 UTC

Updated at

2022-09-03 10:34:05 UTC

NP-MRD ID

NP0173434

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione

Description

(3S,6S,12S,15S,21S)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-[(1H-indol-3-yl)methyl]-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]Tetracosa-4,13,16,19-tetraene-2,11-dione belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone. Based on a literature review very few articles have been published on (3S,6S,12S,15S,21S)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-[(1H-indol-3-yl)methyl]-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]Tetracosa-4,13,16,19-tetraene-2,11-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032212342D          

 55 61  0  0  1  0            999 V2000
    1.9118   -2.6546    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6717   -3.1575    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6626   -3.8704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9606   -4.3038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2343   -3.9127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5323   -4.3461    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1940   -3.9549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2184   -3.1303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9448   -2.7391    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4835   -2.6968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2099   -3.0880    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3890   -4.2616    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4134   -5.0862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7114   -5.5197    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1397   -5.4774    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1641   -6.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4622   -6.7355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4866   -7.5601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7846   -7.9936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0583   -7.6024    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0339   -6.7778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7358   -6.3443    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8417   -5.0439    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5680   -5.4351    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5924   -6.2598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2700   -5.0017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2456   -4.1770    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9476   -3.7436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6739   -4.1348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9231   -2.9189    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.5196   -2.3490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1619   -1.6056    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4561   -1.6825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1968   -2.5278    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1724   -1.7031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8743   -1.2697    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4460   -1.3119    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4216   -0.4873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1236   -0.0538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8868   -0.3670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4205    0.2622    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9870    0.9642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2187    1.7560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6487    2.3525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8472    2.1572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6156    1.3653    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1855    0.7688    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7441   -1.7454    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0177   -1.3542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9933   -0.5296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3157   -1.7877    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5239   -1.5560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0590   -2.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5634   -2.8903    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3402   -2.6123    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
  5 11  1  0  0  0  0
  3 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  4  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 17 22  1  0  0  0  0
 15 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  4  0  0  0
 24 26  1  0  0  0  0
 27 26  1  4  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 30 34  1  1  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 37 38  1  1  0  0  0
 38 39  1  0  0  0  0
 39 40  2  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 39 47  1  0  0  0  0
 42 47  1  0  0  0  0
 37 48  1  0  0  0  0
 48 49  2  0  0  0  0
 49 50  1  4  0  0  0
 49 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
  2 55  1  0  0  0  0
 51 55  1  1  0  0  0
M  END

     RDKit          3D

100106  0  0  0  0  0  0  0  0999 V2000
   -2.2199    1.6182   -3.1207 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7537    1.6288   -1.9211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7354    1.3234   -0.8604 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8716    2.3282   -0.9233 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5067    3.6688   -0.4670 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6251    4.1065    0.8334 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2650    5.3790    1.2013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7680    6.2781    0.2853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4014    7.5820    0.6716 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6398    5.8641   -1.0235 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0102    4.5674   -1.3818 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2213    1.1372    0.4397 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2756    0.1536    1.2279 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6615    0.2341    2.5025 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9458   -1.1185    0.9283 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4339   -0.9883    1.2317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1410   -2.2692    0.9405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2766   -3.2207    1.9365 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9212   -4.4226    1.7174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4565   -4.7157    0.4837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3202   -3.7633   -0.5117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6781   -2.5690   -0.2889 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3986   -2.1916    1.7274 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5447   -3.0528    1.3401 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1293   -4.0264    2.2655 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0042   -3.0310   -0.0422 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2440   -4.2151   -0.2815 N   0  0  0  0  0  0  0  0  0  0  0  0
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    3.4077   -3.7834   -0.3067 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.3484   -3.9605    1.8834 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0426   -2.7151    1.1607 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8348   -1.3764    1.5347 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0993   -1.1583    2.5284 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4197   -0.1964    0.8447 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7746    0.0034    1.5593 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5322    1.1349    1.0289 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7024    2.3969    1.5568 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4742    3.1390    0.7454 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.8268    2.3985   -0.3198 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6042    2.6655   -1.4417 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7755    1.6626   -2.3683 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2096    0.4212   -2.2220 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4450    0.1624   -1.1164 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2413    1.1398   -0.1521 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7211    1.0192    1.0046 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.9313    1.6599    0.2684 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3520    2.8640    0.6439 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5797    1.1313   -1.0738 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7748    1.1850   -2.0101 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4171    3.0598   -2.2981 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3900    1.9281   -1.7834 N   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2332    2.3266   -1.9831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0121    3.4252    1.5777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3611    5.7217    2.2372 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0402    8.2501    0.0365 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8826    4.3113   -2.4239 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2850    0.1041    3.2847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7804   -1.3539   -0.1392 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8501   -0.1896    0.5998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8523   -2.9907    2.9190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0231   -5.1523    2.4896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9636   -5.6547    0.2999 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7471   -3.9983   -1.4937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5860   -1.8440   -1.0830 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6362   -4.9114    2.3347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4337   -2.1012   -0.1782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8995   -3.0852   -0.7295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5176   -6.3443    0.0844 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8364   -2.3982   -0.9496 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3482   -4.5489   -1.1158 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1493   -3.0082   -0.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.4940   -4.6299    1.7819 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.3366   -0.9306    1.6283 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4770    0.2775    2.6134 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2519    2.6993    2.5043 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7520    4.1347    0.9227 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0429    3.6296   -1.5537 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3779    1.8538   -3.2471 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3451   -0.3754   -2.9563 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9690   -0.8040   -0.9429 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8525    3.6105    1.0926 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2703    0.0668   -0.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7046    1.5157   -1.5186 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9338    0.2368   -2.5428 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0329    1.8502   -3.9672 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3542    2.8559   -3.3001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1425    3.6559   -3.0310 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8545    3.6517   -1.4870 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8  7  2  0
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 53 97  1  0
 53 98  1  0
 54 99  1  0
 54100  1  0
 11 63  1  0
 10 62  1  0
M  END


  Mrv1652309032212342D          

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    6.9231   -2.9189    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.5196   -2.3490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1619   -1.6056    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4561   -1.6825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1968   -2.5278    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.1724   -1.7031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8743   -1.2697    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4460   -1.3119    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4216   -0.4873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1236   -0.0538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8868   -0.3670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4205    0.2622    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.9870    0.9642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2187    1.7560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6487    2.3525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8472    2.1572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6156    1.3653    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1855    0.7688    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7441   -1.7454    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0177   -1.3542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9933   -0.5296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3157   -1.7877    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5239   -1.5560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0590   -2.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5634   -2.8903    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3402   -2.6123    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
  5 11  1  0  0  0  0
  3 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  4  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 17 22  1  0  0  0  0
 15 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  4  0  0  0
 24 26  1  0  0  0  0
 27 26  1  4  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 30 34  1  1  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 37 38  1  1  0  0  0
 38 39  1  0  0  0  0
 39 40  2  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 39 47  1  0  0  0  0
 42 47  1  0  0  0  0
 37 48  1  0  0  0  0
 48 49  2  0  0  0  0
 49 50  1  4  0  0  0
 49 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
  2 55  1  0  0  0  0
 51 55  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0173434

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=C(C[C@@H]2N=C(O)[C@H](CC3=CC=CC=C3)N=C(O)CN=C(O)[C@@H]3CCCN3C(=O)[C@H](CC3=CNC4=CC=CC=C34)N=C(O)[C@@H]3CCCN3C2=O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C41H45N7O7/c49-28-16-14-26(15-17-28)21-32-40(54)48-19-7-13-35(48)39(53)46-33(22-27-23-42-30-11-5-4-10-29(27)30)41(55)47-18-6-12-34(47)38(52)43-24-36(50)44-31(37(51)45-32)20-25-8-2-1-3-9-25/h1-5,8-11,14-17,23,31-35,42,49H,6-7,12-13,18-22,24H2,(H,43,52)(H,44,50)(H,45,51)(H,46,53)/t31-,32-,33-,34-,35-/m0/s1

> <INCHI_KEY>
ZVOZDXNHZDXDKS-ZZTWKDBPSA-N

> <FORMULA>
C41H45N7O7

> <MOLECULAR_WEIGHT>
747.853

> <EXACT_MASS>
747.338046817

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
100

> <JCHEM_AVERAGE_POLARIZABILITY>
78.63808242541997

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6S,12S,15S,21S)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-[(1H-indol-3-yl)methyl]-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0^{6,10}]tetracosa-4,13,16,19-tetraene-2,11-dione

> <ALOGPS_LOGP>
2.73

> <JCHEM_LOGP>
1.8459298503315271

> <ALOGPS_LOGS>
-4.45

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
3.2202084364085315

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.43682590323688375

> <JCHEM_PKA_STRONGEST_BASIC>
7.81148267642662

> <JCHEM_POLAR_SURFACE_AREA>
206.99999999999997

> <JCHEM_REFRACTIVITY>
203.67989999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.63e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6S,12S,15S,21S)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1H-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0^{6,10}]tetracosa-4,13,16,19-tetraene-2,11-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  O   UNK     0       3.569  -4.955   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       4.987  -5.894   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.970  -7.225   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.660  -8.034   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.304  -7.304   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.994  -8.113   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.362  -7.383   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.408  -5.843   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -1.764  -5.113   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       0.903  -5.034   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.258  -5.764   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       6.326  -7.955   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       6.372  -9.494   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.061 -10.303   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       7.727 -10.224   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.773 -11.764   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.463 -12.573   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.508 -14.112   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.198 -14.921   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.842 -14.191   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.797 -12.652   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.107 -11.843   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0       9.038  -9.415   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0      10.394 -10.146   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      10.439 -11.685   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      11.704  -9.336   0.000  0.00  0.00           C+0
HETATM   27  N   UNK     0      11.658  -7.797   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0      12.969  -6.988   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      14.325  -7.718   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      12.923  -5.449   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      14.037  -4.385   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      13.369  -2.997   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.051  -3.141   0.000  0.00  0.00           C+0
HETATM   34  N   UNK     0      11.567  -4.718   0.000  0.00  0.00           N+0
HETATM   35  C   UNK     0      11.522  -3.179   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      12.832  -2.370   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      10.166  -2.449   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      10.120  -0.910   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      11.431  -0.100   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      12.855  -0.685   0.000  0.00  0.00           C+0
HETATM   41  N   UNK     0      13.852   0.489   0.000  0.00  0.00           N+0
HETATM   42  C   UNK     0      13.042   1.800   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      13.475   3.278   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      12.411   4.391   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      10.915   4.027   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      10.482   2.549   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      11.546   1.435   0.000  0.00  0.00           C+0
HETATM   48  N   UNK     0       8.856  -3.258   0.000  0.00  0.00           N+0
HETATM   49  C   UNK     0       7.500  -2.528   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0       7.454  -0.989   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0       6.189  -3.337   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       4.711  -2.905   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0       3.843  -4.177   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       4.785  -5.395   0.000  0.00  0.00           C+0
HETATM   55  N   UNK     0       6.235  -4.876   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3   55                                                  
CONECT    3    2    4   12                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   11                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10    5                                                       
CONECT   12    3   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   23                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   17                                                       
CONECT   23   15   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   34                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   30   35                                                  
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38   48                                                  
CONECT   38   37   39                                                       
CONECT   39   38   40   47                                                  
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43   47                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   39   42                                                  
CONECT   48   37   49                                                       
CONECT   49   48   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   52   55                                                  
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54    2   51                                                  
MASTER        0    0    0    0    0    0    0    0   55    0  122    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₁H₄₅N₇O₇

Average Mass

747.8530 Da

Monoisotopic Mass

747.33805 Da

IUPAC Name

(3S,6S,12S,15S,21S)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-[(1H-indol-3-yl)methyl]-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0^{6,10}]tetracosa-4,13,16,19-tetraene-2,11-dione

Traditional Name

(3S,6S,12S,15S,21S)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1H-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0^{6,10}]tetracosa-4,13,16,19-tetraene-2,11-dione

CAS Registry Number

Not Available

SMILES

OC1=CC=C(C[C@@H]2N=C(O)[C@H](CC3=CC=CC=C3)N=C(O)CN=C(O)[C@@H]3CCCN3C(=O)[C@H](CC3=CNC4=CC=CC=C34)N=C(O)[C@@H]3CCCN3C2=O)C=C1

InChI Identifier

InChI=1S/C41H45N7O7/c49-28-16-14-26(15-17-28)21-32-40(54)48-19-7-13-35(48)39(53)46-33(22-27-23-42-30-11-5-4-10-29(27)30)41(55)47-18-6-12-34(47)38(52)43-24-36(50)44-31(37(51)45-32)20-25-8-2-1-3-9-25/h1-5,8-11,14-17,23,31-35,42,49H,6-7,12-13,18-22,24H2,(H,43,52)(H,44,50)(H,45,51)(H,46,53)/t31-,32-,33-,34-,35-/m0/s1

InChI Key

ZVOZDXNHZDXDKS-ZZTWKDBPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Alpha-amino acid or derivatives
3-alkylindole
Indole
Indole or derivatives
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Substituted pyrrole
Benzenoid
Heteroaromatic compound
Tertiary carboxylic acid amide
Pyrrolidine
Pyrrole
Cyclic carboximidic acid
Carboxamide group
Lactam
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Azacycle
Organoheterocyclic compound
Polyol
Organic nitrogen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.73	ALOGPS
logP	1.85	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	0.44	ChemAxon
pKa (Strongest Basic)	7.81	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	207 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	203.68 m³·mol⁻¹	ChemAxon
Polarizability	78.64 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12111359

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione (NP0173434)

MOL for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

3D MOL for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

3D SDF for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

3D-SDF for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

PDB for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

3D PDB for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

SMILES for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

INCHI for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

Structure for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)

3D Structure for NP0173434 ((3s,6s,12s,15s,21s)-15-benzyl-5,14,17,20-tetrahydroxy-12-[(4-hydroxyphenyl)methyl]-3-(1h-indol-3-ylmethyl)-1,4,10,13,16,19-hexaazatricyclo[19.3.0.0⁶,¹⁰]tetracosa-4,13,16,19-tetraene-2,11-dione)