Showing NP-Card for 3-methyloctanoic acid (NP0172146)

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Record Information
Version2.0
Created at2022-09-03 08:58:01 UTC
Updated at2022-09-03 08:58:01 UTC
NP-MRD IDNP0172146
Secondary Accession NumbersNone
Natural Product Identification
Common Name3-methyloctanoic acid
Description3-Methyloctanoic acid belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. In humans, 3-methyloctanoic acid is involved in the acylcarnitine 3-methyloctanoylcarnitine pathway. 3-Methyloctanoic acid is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. 3-methyloctanoic acid is found in Pelargonium graveolens. 3-methyloctanoic acid was first documented in 2020 (PMID: 32097676). Based on a literature review very few articles have been published on 3-methyloctanoic acid.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0172146 (3-methyloctanoic acid)

  Mrv1652309032210582D          

 11 10  0  0  0  0            999 V2000
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
M  END
Download

3D MOL for NP0172146 (3-methyloctanoic acid)

     RDKit          3D

 29 28  0  0  0  0  0  0  0  0999 V2000
    3.2404    1.3557   -0.2946 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0777    0.6553   -0.9269 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9322   -0.7068   -0.2369 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8040   -1.4886   -0.7762 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5679   -0.9676   -0.6611 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1555   -0.7710    0.6810 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4525    0.1851    1.6019 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6138   -0.3447    0.6360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8770    0.9127   -0.0361 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9648    1.6268   -0.4942 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1880    1.3358   -0.1742 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3988    1.0030    0.7601 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1022    2.4660   -0.2895 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1972    1.1394   -0.8237 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3604    0.4039   -1.9792 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1520    1.2203   -0.9844 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0321   -0.6266    0.8436 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8798   -1.2484   -0.5595 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0040   -1.6046   -1.8882 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8617   -2.5383   -0.3875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7170   -0.0652   -1.3306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2234   -1.7439   -1.1809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1519   -1.7768    1.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0892    0.9874    1.1061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2337    0.6493    2.2900 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2268   -0.3252    2.3164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2139   -1.1971    0.1918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0341   -0.2650    1.6758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9649    0.7022   -0.2910 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  1  0
  9 11  1  0
  9 10  2  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  1
  7 24  1  0
  7 25  1  0
  7 26  1  0
  8 27  1  0
  8 28  1  0
 11 29  1  0
M  END
Download

3D SDF for NP0172146 (3-methyloctanoic acid)

  Mrv1652309032210582D          

 11 10  0  0  0  0            999 V2000
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0172146

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(C)CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C9H18O2/c1-3-4-5-6-8(2)7-9(10)11/h8H,3-7H2,1-2H3,(H,10,11)

> <INCHI_KEY>
YKSWLQPMYFCNBG-UHFFFAOYSA-N

> <FORMULA>
C9H18O2

> <MOLECULAR_WEIGHT>
158.241

> <EXACT_MASS>
158.13067982

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
19.066859354597383

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-methyloctanoic acid

> <ALOGPS_LOGP>
3.11

> <JCHEM_LOGP>
2.9870525539999995

> <ALOGPS_LOGS>
-2.59

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.225471364131395

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
44.8242

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.09e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-methyloctanoic acid

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for NP0172146 (3-methyloctanoic acid)

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PDB for NP0172146 (3-methyloctanoic acid)
HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.265   2.461   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      16.266   4.771   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      14.932   2.461   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   20    0
END

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3D PDB for NP0172146 (3-methyloctanoic acid)
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SMILES for NP0172146 (3-methyloctanoic acid)
CCCCCC(C)CC(O)=O
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INCHI for NP0172146 (3-methyloctanoic acid)
InChI=1S/C9H18O2/c1-3-4-5-6-8(2)7-9(10)11/h8H,3-7H2,1-2H3,(H,10,11)
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Synonyms
ValueSource
3-MethyloctanoateGenerator
Chemical FormulaC9H18O2
Average Mass158.2410 Da
Monoisotopic Mass158.13068 Da
IUPAC Name3-methyloctanoic acid
Traditional Name3-methyloctanoic acid
CAS Registry NumberNot Available
SMILES
CCCCCC(C)CC(O)=O
InChI Identifier
InChI=1S/C9H18O2/c1-3-4-5-6-8(2)7-9(10)11/h8H,3-7H2,1-2H3,(H,10,11)
InChI KeyYKSWLQPMYFCNBG-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Pelargonium graveolensLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassFatty Acyls  
Sub ClassFatty acids and conjugates  
Direct ParentMedium-chain fatty acids  
Alternative Parents
Substituents
  • Medium-chain fatty acid
    • 

  • Methyl-branched fatty acid
    • 

  • Branched fatty acid
    • 

  • Monocarboxylic acid or derivatives
    • 

  • Carboxylic acid
    • 

  • Carboxylic acid derivative
    • 

  • Organic oxygen compound
    • 

  • Organic oxide
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Carbonyl group
    • 

  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.11ALOGPS
logP2.99ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)5.23ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area37.3 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity44.82 m³·mol⁻¹ChemAxon
Polarizability19.07 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0340515  
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4471752  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5312327  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Api AM, Belmonte F, Belsito D, Biserta S, Botelho D, Bruze M, Burton GA Jr, Buschmann J, Cancellieri MA, Dagli ML, Date M, Dekant W, Deodhar C, Fryer AD, Gadhia S, Jones L, Joshi K, Lapczynski A, Lavelle M, Liebler DC, Na M, O'Brien D, Patel A, Penning TM, Ritacco G, Rodriguez-Ropero F, Romine J, Sadekar N, Salvito D, Schultz TW, Siddiqi F, Sipes IG, Sullivan G, Thakkar Y, Tokura Y, Tsang S: RIFM fragrance ingredient safety assessment, 4-hydroxy-3-methyloctanoic acid lactone, CAS Registry Number 39212-23-2. Food Chem Toxicol. 2020 Apr 15;138 Suppl 1:111226. doi:  10.1016/j.fct.2020.111226. Epub 2020 Feb 22. [PubMed:32097676  ] 
  2. LOTUS database [Link]