NP-MRD: Showing NP-Card for 4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol (NP0172084)

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Record Information

Version

2.0

Created at

2022-09-03 08:52:55 UTC

Updated at

2022-09-03 08:52:55 UTC

NP-MRD ID

NP0172084

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol

Description

4,12-Bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]Trideca-1(9),2(6),7-triene-8,11-diol belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety. 4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol is found in Picea jezoensis. 4,12-Bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]Trideca-1(9),2(6),7-triene-8,11-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161514202D          

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M  END

     RDKit          3D

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M  END


  Mrv1533004161514202D          

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 11 20  1  0  0  0  0
  8 20  1  0  0  0  0
 20 21  2  0  0  0  0
  4 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  2 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  2  0  0  0  0
 24 31  1  0  0  0  0
 10 32  1  0  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 37 39  2  0  0  0  0
 32 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0172084

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1CC2=C(O)C=C3OC(C(C3=C2OC1C1=CC=C(O)C(O)=C1)C1=CC(O)=CC(O)=C1)C1=CC=C(O)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C29H24O10/c30-15-5-14(6-16(31)9-15)25-26-24(38-28(25)13-2-4-19(33)22(36)8-13)11-20(34)17-10-23(37)27(39-29(17)26)12-1-3-18(32)21(35)7-12/h1-9,11,23,25,27-28,30-37H,10H2

> <INCHI_KEY>
BCIBEYSHPVFKBY-UHFFFAOYSA-N

> <FORMULA>
C29H24O10

> <MOLECULAR_WEIGHT>
532.501

> <EXACT_MASS>
532.136946973

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
52.91946971559875

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-8,11-diol

> <ALOGPS_LOGP>
2.93

> <JCHEM_LOGP>
4.049645277333333

> <ALOGPS_LOGS>
-4.51

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.12330987810504

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.681851286096009

> <JCHEM_PKA_STRONGEST_BASIC>
-3.291406897414369

> <JCHEM_POLAR_SURFACE_AREA>
180.29999999999998

> <JCHEM_REFRACTIVITY>
138.56459999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.65e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-8,11-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  O   UNK     0      -0.411  -1.444   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.128  -1.492   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.939  -0.183   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.479  -0.231   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.290   1.078   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       3.562   2.435   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       5.829   1.030   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.557  -0.327   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       8.053  -0.694   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       8.166  -2.230   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.740  -2.812   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.373  -4.308   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.485  -5.374   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.118  -6.869   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       8.229  -7.935   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       5.639  -7.299   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.527  -6.233   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       3.048  -6.663   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.894  -4.738   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.746  -1.636   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.207  -1.588   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       3.395  -2.897   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.856  -2.849   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.045  -4.158   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.773  -5.515   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.962  -6.824   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.578  -6.776   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -1.389  -8.085   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -1.306  -5.419   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -2.845  -5.371   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -0.494  -4.110   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.475  -3.041   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.832  -2.313   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.141  -3.125   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      12.093  -4.664   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      13.402  -5.475   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      10.736  -5.392   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      10.688  -6.931   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       9.427  -4.581   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   23                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   21                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   20                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   32                                                  
CONECT   11   10   12   20                                                  
CONECT   12   11   13   19                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   12                                                       
CONECT   20   11    8   21                                                  
CONECT   21   20    4   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22    2   24                                                  
CONECT   24   23   25   31                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   24                                                       
CONECT   32   10   33   39                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37   32                                                       
MASTER        0    0    0    0    0    0    0    0   39    0   88    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₂₄O₁₀

Average Mass

532.5010 Da

Monoisotopic Mass

532.13695 Da

IUPAC Name

4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-8,11-diol

Traditional Name

4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-8,11-diol

CAS Registry Number

Not Available

SMILES

OC1CC2=C(O)C=C3OC(C(C3=C2OC1C1=CC=C(O)C(O)=C1)C1=CC(O)=CC(O)=C1)C1=CC=C(O)C(O)=C1

InChI Identifier

InChI=1S/C29H24O10/c30-15-5-14(6-16(31)9-15)25-26-24(38-28(25)13-2-4-19(33)22(36)8-13)11-20(34)17-10-23(37)27(39-29(17)26)12-1-3-18(32)21(35)7-12/h1-9,11,23,25,27-28,30-37H,10H2

InChI Key

BCIBEYSHPVFKBY-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Picea jezoensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

2-arylbenzofuran flavonoids

Sub Class

Not Available

Direct Parent

2-arylbenzofuran flavonoids

Alternative Parents

Substituents

2-arylbenzofuran flavonoid
Catechin
Linear 1,7-diphenylheptane skeleton
3'-hydroxyflavonoid
3-hydroxyflavonoid
4'-hydroxyflavonoid
5-hydroxyflavonoid
Flavan-3-ol
Hydroxyflavonoid
Neolignan skeleton
Flavan
1-phenylcoumaran
Stilbene
Chromane
Benzopyran
1-benzopyran
Coumaran
Benzofuran
Resorcinol
Catechol
Phenol
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
1-hydroxy-4-unsubstituted benzenoid
Benzenoid
Monocyclic benzene moiety
Secondary alcohol
Organoheterocyclic compound
Oxacycle
Ether
Alcohol
Organic oxygen compound
Organooxygen compound
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.93	ALOGPS
logP	4.05	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	8.68	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	180.3 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	138.56 m³·mol⁻¹	ChemAxon
Polarizability	52.92 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74073812

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol (NP0172084)

MOL for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

3D MOL for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

3D SDF for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

3D-SDF for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

PDB for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

3D PDB for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

SMILES for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

INCHI for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

Structure for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)

3D Structure for NP0172084 (4,12-bis(3,4-dihydroxyphenyl)-3-(3,5-dihydroxyphenyl)-5,13-dioxatricyclo[7.4.0.0²,⁶]trideca-1(9),2(6),7-triene-8,11-diol)