NP-MRD: Showing NP-Card for (4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one (NP0170909)

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Record Information

Version

2.0

Created at

2022-09-03 07:12:24 UTC

Updated at

2022-09-03 07:12:24 UTC

NP-MRD ID

NP0170909

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one

Description

Pondaplin belongs to the class of organic compounds known as alkyl aryl ethers. These are organic compounds containing the alkyl aryl ether functional group with the generic formula R-O-R' , where R is an alkyl group and R' is an aryl group. Pondaplin is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Pondaplin has been detected, but not quantified in, alcoholic beverages and fruits. (4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one is found in Annona glabra. This could make pondaplin a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 32  0  0  0  0  0  0  0  0999 V2000
    2.2922   -0.5091    2.0286 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7094   -0.6207    0.6370 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4953   -1.7927    0.1171 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5523   -2.2598   -1.2600 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0801   -2.5928   -1.5679 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7522   -1.4722   -1.1124 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0257   -0.5364   -1.9882 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7778    0.6180   -1.6248 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2232    0.7747   -0.3850 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9573   -0.2232    0.5497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2021   -1.3769    0.1747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7529    2.1392    0.0237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6850    2.9741    0.4523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3934    2.3568    0.8325 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0444    2.9285    1.9437 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4200    1.4215    0.3841 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3995    0.6270   -0.0960 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6167   -1.0484    2.7426 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2904   -0.9856    2.0325 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4341    0.5458    2.3037 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2201   -2.5939    0.8501 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9868   -3.2623   -1.2974 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9229   -1.6424   -2.0324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7421   -0.5347   -3.1446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9232    1.3003   -2.5965 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2199   -0.3757    1.6019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0989   -2.0953    1.0152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7121    2.6258    0.0944 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8595    4.0355    0.4805 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4539    0.3927   -1.1796 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4073    1.1821    0.0205 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
  9 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  1  0
 17  2  1  0
 11  6  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  3 21  1  0
  4 22  1  0
  4 23  1  0
  7 24  1  0
  8 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 13 29  1  0
 17 30  1  0
 17 31  1  0
M  END


  Mrv0541 02241214212D          

 17 18  0  0  0  0            999 V2000
    0.4122    1.4293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4124    1.4293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8246    0.7147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4124    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4122    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8245    0.7147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6491    0.7147    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6491    0.7147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8245   -0.7146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6491   -0.7146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0614    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0614    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6491   -0.7146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8246   -0.7146    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0276   -0.3023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2418   -1.2973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0614   -1.4293    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1  6  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  8  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7 11  1  0  0  0  0
  8 12  2  0  0  0  0
  9 10  2  0  0  0  0
  9 15  1  0  0  0  0
  9 16  1  0  0  0  0
 10 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 17  2  0  0  0  0
 14 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0170909

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C1=C\COC2=CC=C(C=C2)\C=C/C(=O)OC1

> <INCHI_IDENTIFIER>
InChI=1S/C14H14O3/c1-11-8-9-16-13-5-2-12(3-6-13)4-7-14(15)17-10-11/h2-8H,9-10H2,1H3/b7-4-,11-8-

> <INCHI_KEY>
WPMGVJJSBNXOQS-XGBXBTFKSA-N

> <FORMULA>
C14H14O3

> <MOLECULAR_WEIGHT>
230.2592

> <EXACT_MASS>
230.094294314

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
23.240685346379777

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4Z,9Z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one

> <ALOGPS_LOGP>
2.87

> <JCHEM_LOGP>
2.956694385333334

> <ALOGPS_LOGS>
-3.67

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.854342107124024

> <JCHEM_POLAR_SURFACE_AREA>
35.53

> <JCHEM_REFRACTIVITY>
66.9238

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.90e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4Z,9Z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0       0.769   2.668   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.770   2.668   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.539   1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.770   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.769   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.539   1.334   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.078   1.334   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -3.078   1.334   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.539  -1.334   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.078  -1.334   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.848   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.848   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.078  -1.334   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.539  -1.334   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -0.052  -0.564   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.451  -2.422   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -3.848  -2.668   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    1    5    7                                                  
CONECT    7    6   11                                                       
CONECT    8    3   12                                                       
CONECT    9   10   15   16                                                  
CONECT   10    9   11                                                       
CONECT   11    7   10                                                       
CONECT   12    8   13                                                       
CONECT   13   12   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15    9   14                                                       
CONECT   16    9                                                            
CONECT   17   13                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Value	Source
Pondaplin	MeSH

Chemical Formula

C₁₄H₁₄O₃

Average Mass

230.2592 Da

Monoisotopic Mass

230.09429 Da

IUPAC Name

(4Z,9Z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one

Traditional Name

(4Z,9Z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one

CAS Registry Number

Not Available

SMILES

C\C1=C\COC2=CC=C(C=C2)\C=C/C(=O)OC1

InChI Identifier

InChI=1S/C14H14O3/c1-11-8-9-16-13-5-2-12(3-6-13)4-7-14(15)17-10-11/h2-8H,9-10H2,1H3/b7-4-,11-8-

InChI Key

WPMGVJJSBNXOQS-XGBXBTFKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Annona glabra	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alkyl aryl ethers. These are organic compounds containing the alkyl aryl ether functional group with the generic formula R-O-R' , where R is an alkyl group and R' is an aryl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Ethers

Direct Parent

Alkyl aryl ethers

Alternative Parents

Substituents

Alkyl aryl ether
Benzenoid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxide
Hydrocarbon derivative
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.87	ALOGPS
logP	2.96	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	35.53 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	66.92 m³·mol⁻¹	ChemAxon
Polarizability	23.24 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0033184

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB011195

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

100930994

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one (NP0170909)

MOL for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

3D MOL for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

3D SDF for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

3D-SDF for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

PDB for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

3D PDB for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

SMILES for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

INCHI for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

Structure for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)

3D Structure for NP0170909 ((4z,9z)-5-methyl-2,7-dioxabicyclo[9.2.2]pentadeca-1(13),4,9,11,14-pentaen-8-one)