NP-MRD: Showing NP-Card for (3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one (NP0170672)

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Record Information

Version

2.0

Created at

2022-09-03 06:53:45 UTC

Updated at

2022-09-03 06:53:45 UTC

NP-MRD ID

NP0170672

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one

Description

(3S,8aS)-2-hydroxy-3-(propan-2-yl)-3H,4H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrimidin-4-one belongs to the class of organic compounds known as pyrimidones. Pyrimidones are compounds that contain a pyrimidine ring, which bears a ketone. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions. (3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one is found in Aconitum taipeicum. Based on a literature review very few articles have been published on (3S,8aS)-2-hydroxy-3-(propan-2-yl)-3H,4H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrimidin-4-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 31  0  0  0  0  0  0  0  0999 V2000
   -3.2757    0.1408   -1.0112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3217    0.0281    0.1149 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6709   -1.2057    0.9206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8797    0.0113   -0.2549 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0053   -0.2872    0.8998 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4425   -0.7343    1.9781 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3960   -0.0646    0.7920 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5626   -0.6847    1.3236 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4461   -0.8153    0.0864 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9909    0.3565   -0.7772 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8881    1.0401   -0.0534 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8236    1.5639   -0.8230 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3846    1.1789   -0.9588 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2360    1.9347   -1.8271 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4077    1.2176   -1.3121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2957   -0.1500   -0.6183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0830   -0.5125   -1.8634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4817    0.9108    0.7961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9387   -2.0331    0.7380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6561   -1.6164    0.6079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7693   -0.9828    2.0050 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7451   -0.8704   -0.9523 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3694   -1.6714    1.7880 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0777    0.0161    2.0035 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1597   -1.7365   -0.4548 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5057   -0.7819    0.3331 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8863    1.0385   -0.8427 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7617    0.0653   -1.8038 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2720    1.7926    0.6979 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5564    2.8515   -1.5319 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4 13  1  0
 13 14  1  0
 13 12  2  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  5  1  0
  5  6  2  0
  5  4  1  0
  7 11  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  2 18  1  0
  3 19  1  0
  3 20  1  0
  3 21  1  0
  4 22  1  6
 14 30  1  0
 11 29  1  1
 10 27  1  0
 10 28  1  0
  9 25  1  0
  9 26  1  0
  8 23  1  0
  8 24  1  0
M  END


  Mrv1652309032208532D          

 14 15  0  0  1  0            999 V2000
    3.4990    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845   -0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701    1.1104    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3556    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556   -0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411    1.1104    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435    0.8555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6284    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435    2.1904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411    1.9354    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3556    2.3479    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845    2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  2  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11  7  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  4 13  1  0  0  0  0
 13 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0170672

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@H]1C(O)=N[C@@H]2CCCN2C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C10H16N2O2/c1-6(2)8-9(13)11-7-4-3-5-12(7)10(8)14/h6-8H,3-5H2,1-2H3,(H,11,13)/t7-,8-/m0/s1

> <INCHI_KEY>
DLSUHFPRLXCWPH-YUMQZZPRSA-N

> <FORMULA>
C10H16N2O2

> <MOLECULAR_WEIGHT>
196.25

> <EXACT_MASS>
196.121177763

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
20.80625418080612

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,8aS)-2-hydroxy-3-(propan-2-yl)-3H,4H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrimidin-4-one

> <ALOGPS_LOGP>
0.07

> <JCHEM_LOGP>
1.1516529956666663

> <ALOGPS_LOGS>
-1.40

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.023685587722415

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.458286394005115

> <JCHEM_PKA_STRONGEST_BASIC>
1.8844221984556688

> <JCHEM_POLAR_SURFACE_AREA>
52.900000000000006

> <JCHEM_REFRACTIVITY>
51.98810000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.77e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,8aS)-2-hydroxy-3-isopropyl-3H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrimidin-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       6.531   2.073   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.198   1.303   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.198  -0.237   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.864   2.073   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.530   1.303   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       2.530  -0.237   0.000  0.00  0.00           O+0
HETATM    7  N   UNK     0       1.197   2.073   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      -0.268   1.597   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.173   2.843   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.268   4.089   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.197   3.613   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       2.530   4.383   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       3.864   3.613   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.198   4.383   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   13                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   11                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    7   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12    4   14                                                  
CONECT   14   13                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₀H₁₆N₂O₂

Average Mass

196.2500 Da

Monoisotopic Mass

196.12118 Da

IUPAC Name

(3S,8aS)-2-hydroxy-3-(propan-2-yl)-3H,4H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrimidin-4-one

Traditional Name

(3S,8aS)-2-hydroxy-3-isopropyl-3H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrimidin-4-one

CAS Registry Number

Not Available

SMILES

CC(C)[C@H]1C(O)=N[C@@H]2CCCN2C1=O

InChI Identifier

InChI=1S/C10H16N2O2/c1-6(2)8-9(13)11-7-4-3-5-12(7)10(8)14/h6-8H,3-5H2,1-2H3,(H,11,13)/t7-,8-/m0/s1

InChI Key

DLSUHFPRLXCWPH-YUMQZZPRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aconitum taipeicum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidones. Pyrimidones are compounds that contain a pyrimidine ring, which bears a ketone. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Diazines

Sub Class

Pyrimidines and pyrimidine derivatives

Direct Parent

Pyrimidones

Alternative Parents

Substituents

Pyrimidone
Hydropyrimidine
1,2,5,6-tetrahydropyrimidine
Pyrrolidine
Tertiary carboxylic acid amide
Cyclic carboximidic acid
Carboxamide group
Lactam
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboxylic acid derivative
Azacycle
Carbonyl group
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.07	ALOGPS
logP	1.15	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	4.46	ChemAxon
pKa (Strongest Basic)	1.88	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	52.9 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	51.99 m³·mol⁻¹	ChemAxon
Polarizability	20.81 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163042190

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one (NP0170672)

MOL for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

3D MOL for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

3D SDF for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

3D-SDF for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

PDB for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

3D PDB for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

SMILES for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

INCHI for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

Structure for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)

3D Structure for NP0170672 ((3s,8as)-2-hydroxy-3-isopropyl-3h,6h,7h,8h,8ah-pyrrolo[1,2-a]pyrimidin-4-one)