NP-MRD: Showing NP-Card for [(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate (NP0170089)

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Record Information

Version

2.0

Created at

2022-09-03 06:09:55 UTC

Updated at

2022-09-03 06:09:55 UTC

NP-MRD ID

NP0170089

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate

Description

(E)-3-(3,5-Dimethoxy-4-hydroxyphenyl)acryloyl 6-O-galloyl-beta-D-glucopyranoside belongs to the class of organic compounds known as hydroxycinnamic acid glycosides. These are glycosylated hydoxycinnamic acids derivatives. [(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate is found in Myriophyllum verticillatum. Based on a literature review very few articles have been published on (E)-3-(3,5-Dimethoxy-4-hydroxyphenyl)acryloyl 6-O-galloyl-beta-D-glucopyranoside.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032208092D          

 38 40  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309032208092D          

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 31 32  1  1  0  0  0
  5 33  2  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 34 37  2  0  0  0  0
  3 37  1  0  0  0  0
 37 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0170089

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(\C=C\C(=O)O[C@@H]2O[C@H](COC(=O)C3=CC(O)=C(O)C(O)=C3)[C@@H](O)[C@H](O)[C@H]2O)=CC(OC)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C24H26O14/c1-34-14-5-10(6-15(35-2)19(14)29)3-4-17(27)38-24-22(32)21(31)20(30)16(37-24)9-36-23(33)11-7-12(25)18(28)13(26)8-11/h3-8,16,20-22,24-26,28-32H,9H2,1-2H3/b4-3+/t16-,20-,21+,22-,24+/m1/s1

> <INCHI_KEY>
SCXUKRFESVSQSS-UGVHACPXSA-N

> <FORMULA>
C24H26O14

> <MOLECULAR_WEIGHT>
538.458

> <EXACT_MASS>
538.132255517

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
52.16057393715086

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate

> <ALOGPS_LOGP>
1.39

> <JCHEM_LOGP>
1.0670475306666658

> <ALOGPS_LOGS>
-2.96

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.311270941609417

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.080112752711988

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6491131426668026

> <JCHEM_POLAR_SURFACE_AREA>
221.89999999999995

> <JCHEM_REFRACTIVITY>
126.1631

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.94e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       4.001 -11.550   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.335 -12.320   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       5.335 -13.860   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.668 -14.630   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.668 -16.170   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.002 -16.940   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.002 -18.480   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.336 -19.250   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       9.336 -20.790   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      10.669 -18.480   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      12.003 -19.250   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      13.337 -18.480   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      14.670 -19.250   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      16.004 -18.480   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      17.338 -19.250   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      18.672 -18.480   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      18.672 -16.940   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      20.005 -19.250   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      21.339 -18.480   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      22.673 -19.250   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      24.006 -18.480   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      22.673 -20.790   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      24.006 -21.560   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      21.339 -21.560   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      21.339 -23.100   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      20.005 -20.790   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.670 -20.790   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      16.004 -21.560   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      13.337 -21.560   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      13.337 -23.100   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      12.003 -20.790   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      10.669 -21.560   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       5.335 -16.940   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.001 -16.170   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       2.667 -16.940   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       1.334 -16.170   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.001 -14.630   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       2.667 -13.860   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   37                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   33                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   31                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   27                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   18                                                       
CONECT   27   13   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   11   32                                                  
CONECT   32   31                                                            
CONECT   33    5   34                                                       
CONECT   34   33   35   37                                                  
CONECT   35   34   36                                                       
CONECT   36   35                                                            
CONECT   37   34    3   38                                                  
CONECT   38   37                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   80    0
END

View in JSmol

Synonyms

Value	Source
(e)-3-(3,5-Dimethoxy-4-hydroxyphenyl)acryloyl 6-O-galloyl-b-D-glucopyranoside	Generator
(e)-3-(3,5-Dimethoxy-4-hydroxyphenyl)acryloyl 6-O-galloyl-β-D-glucopyranoside	Generator

Chemical Formula

C₂₄H₂₆O₁₄

Average Mass

538.4580 Da

Monoisotopic Mass

538.13226 Da

IUPAC Name

[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate

Traditional Name

[(2R,3S,4S,5R,6S)-3,4,5-trihydroxy-6-{[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate

CAS Registry Number

Not Available

SMILES

COC1=CC(\C=C\C(=O)O[C@@H]2O[C@H](COC(=O)C3=CC(O)=C(O)C(O)=C3)[C@@H](O)[C@H](O)[C@H]2O)=CC(OC)=C1O

InChI Identifier

InChI=1S/C24H26O14/c1-34-14-5-10(6-15(35-2)19(14)29)3-4-17(27)38-24-22(32)21(31)20(30)16(37-24)9-36-23(33)11-7-12(25)18(28)13(26)8-11/h3-8,16,20-22,24-26,28-32H,9H2,1-2H3/b4-3+/t16-,20-,21+,22-,24+/m1/s1

InChI Key

SCXUKRFESVSQSS-UGVHACPXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Myriophyllum verticillatum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxycinnamic acid glycosides. These are glycosylated hydoxycinnamic acids derivatives.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Hydroxycinnamic acids and derivatives

Direct Parent

Hydroxycinnamic acid glycosides

Alternative Parents

Substituents

Hydroxycinnamic acid glycoside
O-cinnamoyl glycoside
Galloyl ester
Gallic acid or derivatives
Coumaric acid or derivatives
Cinnamic acid ester
P-hydroxybenzoic acid alkyl ester
M-hydroxybenzoic acid ester
P-hydroxybenzoic acid ester
Methoxyphenol
Benzoate ester
M-dimethoxybenzene
Dimethoxybenzene
Pyrogallol derivative
Benzenetriol
Benzoic acid or derivatives
Phenoxy compound
Phenol ether
Benzoyl
Anisole
Styrene
Methoxybenzene
1-hydroxy-4-unsubstituted benzenoid
Phenol
Fatty acid ester
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Oxane
Monosaccharide
Fatty acyl
Benzenoid
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary alcohol
Carboxylic acid ester
Carboxylic acid derivative
Polyol
Acetal
Organoheterocyclic compound
Oxacycle
Ether
Alcohol
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.39	ALOGPS
logP	1.07	ChemAxon
logS	-3	ALOGPS
pKa (Strongest Acidic)	8.08	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	221.9 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	126.16 m³·mol⁻¹	ChemAxon
Polarizability	52.16 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15126899

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate (NP0170089)

MOL for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

3D MOL for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

3D SDF for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

3D-SDF for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

PDB for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

3D PDB for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

SMILES for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

INCHI for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

Structure for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)

3D Structure for NP0170089 ([(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-{[(2e)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate)