NP-MRD: Showing NP-Card for 10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol (NP0169834)

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Record Information

Version

2.0

Created at

2022-09-03 05:51:28 UTC

Updated at

2022-09-03 05:51:28 UTC

NP-MRD ID

NP0169834

Secondary Accession Numbers

None

Natural Product Identification

Common Name

10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol

Description

Ginsenoyne B belongs to the class of organic compounds known as chlorohydrins. These are alcohols substituted by a chlorine atom at a saturated carbon atom otherwise bearing only hydrogen or hydrocarbyl groups. Ginsenoyne B is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Ginsenoyne B has been detected, but not quantified in, tea. 10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol is found in Panax ginseng. This could make ginsenoyne b a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 43 42  0  0  0  0  0  0  0  0999 V2000
   -5.9194    1.7725   -0.8191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9104    0.5338   -0.3317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1681    0.2077    0.9149 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0990   -0.8375    0.6748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1121   -0.3123   -0.3492 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0226   -1.2930   -0.6394 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0371   -0.7819   -1.6657 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3539    0.4745   -1.2375 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4685    0.2896    0.3035 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    0.6111    0.9376   -2.2931 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1342    1.0672   -3.4860 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7135   -0.0659   -2.4535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5357   -0.2560   -1.2700 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2395   -0.4161   -0.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0715   -0.5827    0.8367 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7804   -0.7045    1.8057 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6390   -0.8302    2.9961 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8167   -0.5730    4.0949 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7001    0.2151    3.0001 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0076    0.9099    1.9213 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4642    1.9862   -1.7241 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3957    2.5633   -0.3300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4459   -0.2634   -0.8361 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8947   -0.2306    1.6449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7357    1.1242    1.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6160   -1.7394    0.2796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6383   -1.1004    1.6271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6795    0.6186    0.0802 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6644   -0.0618   -1.2570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4017   -2.2743   -0.9520 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4196   -1.4809    0.2974 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3140   -1.6134   -1.8448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5408   -0.6126   -2.6552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1880    1.2377   -1.1229 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0043    1.9597   -2.0880 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3711    0.6229   -4.1979 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3361    0.3125   -3.3161 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3638   -1.0567   -2.7695 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0913   -1.8287    3.0397 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8677   -0.7538    3.8695 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2331    0.4069    3.9208 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7851    1.6544    1.9830 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5190    0.7751    0.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
 17 19  1  0
 19 20  2  3
 17 16  1  0
 16 15  3  0
 15 14  1  0
 14 13  3  0
 13 12  1  0
 12 10  1  0
 10 11  1  0
 10  8  1  0
  8  9  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
 18 40  1  0
 17 39  1  1
 19 41  1  0
 20 42  1  0
 20 43  1  0
 12 37  1  0
 12 38  1  0
 10 35  1  1
 11 36  1  0
  8 34  1  1
  7 32  1  0
  7 33  1  0
  6 30  1  0
  6 31  1  0
  5 28  1  0
  5 29  1  0
  4 26  1  0
  4 27  1  0
  3 24  1  0
  3 25  1  0
  2 23  1  0
  1 21  1  0
  1 22  1  0
M  END


  Mrv0541 05061310522D          

 20 19  0  0  0  0            999 V2000
    3.8230   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.2546   -0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5375   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.5401   -0.4934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9664   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6809   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6822   -1.3184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3967   -0.9059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3954   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9677   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1112   -0.4934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1099   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2533   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.8256   -0.0809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8243   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5388   -1.7309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8243   -2.9684    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   13.8256    0.7441    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5388   -0.9059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  2  0  0  0  0
  4  2  2  0  0  0  0
  5  3  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  9  8  1  0  0  0  0
 10  7  1  0  0  0  0
 11  8  3  0  0  0  0
 12  9  3  0  0  0  0
 13 10  1  0  0  0  0
 14 11  1  0  0  0  0
 15  4  1  0  0  0  0
 15 12  1  0  0  0  0
 16 13  1  0  0  0  0
 17 14  1  0  0  0  0
 17 16  1  0  0  0  0
 18 16  1  0  0  0  0
 19 15  1  0  0  0  0
 20 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0169834

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(C=C)C#CC#CCC(O)C(Cl)CCCCCC=C

> <INCHI_IDENTIFIER>
InChI=1S/C17H23ClO2/c1-3-5-6-7-10-13-16(18)17(20)14-11-8-9-12-15(19)4-2/h3-4,15-17,19-20H,1-2,5-7,10,13-14H2

> <INCHI_KEY>
MORPELUWUARUFU-UHFFFAOYSA-N

> <FORMULA>
C17H23ClO2

> <MOLECULAR_WEIGHT>
294.816

> <EXACT_MASS>
294.138657687

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
33.96701446151681

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol

> <ALOGPS_LOGP>
4.16

> <JCHEM_LOGP>
4.400896679333332

> <ALOGPS_LOGS>
-4.52

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.869071023873271

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.159271722101508

> <JCHEM_PKA_STRONGEST_BASIC>
-3.352512342991057

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
86.27369999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.90e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       7.136  -3.231   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      28.475  -0.151   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.470  -4.001   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      27.142  -0.921   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.804  -3.231   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.137  -4.001   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.471  -3.231   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      21.807  -2.461   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      23.141  -1.691   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.805  -4.001   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      20.473  -3.231   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      24.474  -0.921   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      15.138  -3.231   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      19.139  -4.001   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      25.808  -0.151   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      16.472  -4.001   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      17.806  -3.231   0.000  0.00  0.00           C+0
HETATM   18 Cl   UNK     0      16.472  -5.541   0.000  0.00  0.00          Cl+0
HETATM   19  O   UNK     0      25.808   1.389   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      17.806  -1.691   0.000  0.00  0.00           O+0
CONECT    1    3                                                            
CONECT    2    4                                                            
CONECT    3    1    5                                                       
CONECT    4    2   15                                                       
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6   10                                                       
CONECT    8    9   11                                                       
CONECT    9    8   12                                                       
CONECT   10    7   13                                                       
CONECT   11    8   14                                                       
CONECT   12    9   15                                                       
CONECT   13   10   16                                                       
CONECT   14   11   17                                                       
CONECT   15    4   12   19                                                  
CONECT   16   13   17   18                                                  
CONECT   17   14   16   20                                                  
CONECT   18   16                                                            
CONECT   19   15                                                            
CONECT   20   17                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₂₃ClO₂

Average Mass

294.8160 Da

Monoisotopic Mass

294.13866 Da

IUPAC Name

10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol

Traditional Name

10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol

CAS Registry Number

Not Available

SMILES

OC(C=C)C#CC#CCC(O)C(Cl)CCCCCC=C

InChI Identifier

InChI=1S/C17H23ClO2/c1-3-5-6-7-10-13-16(18)17(20)14-11-8-9-12-15(19)4-2/h3-4,15-17,19-20H,1-2,5-7,10,13-14H2

InChI Key

MORPELUWUARUFU-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Panax ginseng	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as chlorohydrins. These are alcohols substituted by a chlorine atom at a saturated carbon atom otherwise bearing only hydrogen or hydrocarbyl groups.

Kingdom

Organic compounds

Super Class

Organohalogen compounds

Class

Halohydrins

Sub Class

Chlorohydrins

Direct Parent

Chlorohydrins

Alternative Parents

Substituents

Secondary alcohol
Chlorohydrin
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Organochloride
Alkyl halide
Alkyl chloride
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.16	ALOGPS
logP	4.4	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	13.16	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	86.27 m³·mol⁻¹	ChemAxon
Polarizability	33.97 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0039134

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB018652

KNApSAcK ID

Not Available

Chemspider ID

4476451

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5317633

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol (NP0169834)

MOL for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

3D MOL for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

3D SDF for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

3D-SDF for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

PDB for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

3D PDB for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

SMILES for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

INCHI for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

Structure for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)

3D Structure for NP0169834 (10-chloroheptadeca-1,16-dien-4,6-diyne-3,9-diol)