Np mrd loader

Record Information
Version2.0
Created at2022-09-03 04:52:41 UTC
Updated at2022-09-03 04:52:41 UTC
NP-MRD IDNP0168991
Secondary Accession NumbersNone
Natural Product Identification
Common Name(z)-(hydroxyimino)({1-[(1-hydroxyoctylidene)amino]-3-methylbutan-2-yl})oxidoazanium
DescriptionFragin belongs to the class of organic compounds known as trialkylamines. These are organic compounds containing a trialkylamine group, characterized by exactly three alkyl groups bonded to the amino nitrogen. (z)-(hydroxyimino)({1-[(1-hydroxyoctylidene)amino]-3-methylbutan-2-yl})oxidoazanium is found in Pseudomonas fragi. (z)-(hydroxyimino)({1-[(1-hydroxyoctylidene)amino]-3-methylbutan-2-yl})oxidoazanium was first documented in 2018 (PMID: 29602945). Based on a literature review a small amount of articles have been published on Fragin (PMID: 31945256) (PMID: 34594316) (PMID: 34659189) (PMID: 32212725).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC13H27N3O3
Average Mass273.3770 Da
Monoisotopic Mass273.20524 Da
IUPAC Name(Z)-(hydroxyimino)({1-[(1-hydroxyoctylidene)amino]-3-methylbutan-2-yl})oxidoazanium
Traditional Name(Z)-(hydroxyimino)({1-[(1-hydroxyoctylidene)amino]-3-methylbutan-2-yl})oxidoazanium
CAS Registry NumberNot Available
SMILES
CCCCCCCC(O)=NCC(C(C)C)[N+](\[O-])=N\O
InChI Identifier
InChI=1S/C13H27N3O3/c1-4-5-6-7-8-9-13(17)14-10-12(11(2)3)16(19)15-18/h11-12,18H,4-10H2,1-3H3,(H,14,17)/b16-15-
InChI KeySXMAXSCAVUEAAA-NXVVXOECSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Pseudomonas fragiLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as trialkylamines. These are organic compounds containing a trialkylamine group, characterized by exactly three alkyl groups bonded to the amino nitrogen.
KingdomOrganic compounds
Super ClassOrganic nitrogen compounds
ClassOrganonitrogen compounds
Sub ClassAmines
Direct ParentTrialkylamines
Alternative Parents
Substituents
  • Tertiary aliphatic amine
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carboximidic acid derivative
  • Carboximidic acid
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.26ALOGPS
logP3.52ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)4.28ChemAxon
pKa (Strongest Basic)3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area91.25 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity76.38 m³·mol⁻¹ChemAxon
Polarizability31.38 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00011938
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound135502789
PDB IDNot Available
ChEBI ID156352
Good Scents IDNot Available
References
General References
  1. Jenul C, Sieber S, Daeppen C, Mathew A, Lardi M, Pessi G, Hoepfner D, Neuburger M, Linden A, Gademann K, Eberl L: Biosynthesis of fragin is controlled by a novel quorum sensing signal. Nat Commun. 2018 Mar 30;9(1):1297. doi: 10.1038/s41467-018-03690-2. [PubMed:29602945 ]
  2. Sieber S, Daeppen C, Jenul C, Mannancherril V, Eberl L, Gademann K: Biosynthesis and Structure-Activity Relationship Investigations of the Diazeniumdiolate Antifungal Agent Fragin. Chembiochem. 2020 Jun 2;21(11):1587-1592. doi: 10.1002/cbic.201900755. Epub 2020 Mar 4. [PubMed:31945256 ]
  3. Zhou L, de Jong A, Yi Y, Kuipers OP: Identification, Isolation, and Characterization of Medipeptins, Antimicrobial Peptides From Pseudomonas mediterranea EDOX. Front Microbiol. 2021 Sep 14;12:732771. doi: 10.3389/fmicb.2021.732771. eCollection 2021. [PubMed:34594316 ]
  4. Nascimento FX, Uron P, Glick BR, Giachini A, Rossi MJ: Genomic Analysis of the 1-Aminocyclopropane-1-Carboxylate Deaminase-Producing Pseudomonas thivervalensis SC5 Reveals Its Multifaceted Roles in Soil and in Beneficial Interactions With Plants. Front Microbiol. 2021 Sep 30;12:752288. doi: 10.3389/fmicb.2021.752288. eCollection 2021. [PubMed:34659189 ]
  5. McAvoy AC, Jaiyesimi O, Threatt PH, Seladi T, Goldberg JB, da Silva RR, Garg N: Differences in Cystic Fibrosis-Associated Burkholderia spp. Bacteria Metabolomes after Exposure to the Antibiotic Trimethoprim. ACS Infect Dis. 2020 May 8;6(5):1154-1168. doi: 10.1021/acsinfecdis.9b00513. Epub 2020 Apr 1. [PubMed:32212725 ]
  6. LOTUS database [Link]