NP-MRD: Showing NP-Card for (3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one (NP0168506)

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Record Information

Version

2.0

Created at

2022-09-03 04:19:36 UTC

Updated at

2022-09-03 04:19:36 UTC

NP-MRD ID

NP0168506

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one

Description

(3S,5R)-5-[(6R,11R)-6,11-dihydroxy-11-[(2S,5R)-5-[(1S)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain. Based on a literature review very few articles have been published on (3S,5R)-5-[(6R,11R)-6,11-dihydroxy-11-[(2S,5R)-5-[(1S)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032206192D          

 42 43  0  0  1  0            999 V2000
   14.9140   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6284   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3429   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0574   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7718   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4863   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.2008   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.9153   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   22.0587   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.7731   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   23.4876   -7.0886    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   24.9558   -6.1866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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M  END

     RDKit          3D

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 12 67  1  0
 13 68  1  1
 14 69  1  0
 15 70  1  6
 16 71  1  0
 16 72  1  0
 17 73  1  0
 17 74  1  0
 18 75  1  6
 19 76  1  1
 20 77  1  0
 21 78  1  0
 21 79  1  0
 22 80  1  0
 22 81  1  0
 23 82  1  0
 23 83  1  0
 24 84  1  0
 24 85  1  0
 25 86  1  6
 26 87  1  0
 27 88  1  0
 27 89  1  0
 28 90  1  0
 28 91  1  0
 29 92  1  0
 29 93  1  0
 30 94  1  0
 30 95  1  0
 31 96  1  0
 31 97  1  0
 32 98  1  1
 33 99  1  0
 33100  1  0
 34101  1  6
 35102  1  0
 35103  1  0
 37104  1  0
 37105  1  0
 37106  1  0
M  END


  Mrv1652309032206192D          

 42 43  0  0  1  0            999 V2000
   14.9140   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6284   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3429   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0574   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7718   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4863   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.2008   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.9153   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6297   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.3442   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0587   -6.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.7731   -5.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.4876   -6.2636    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   23.4876   -7.0886    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.2021   -5.8511    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   24.2883   -5.0306    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.0953   -4.8591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.5078   -5.5735    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   26.3283   -5.6598    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   26.8132   -4.9923    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.6638   -6.4134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.4843   -6.4997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.8199   -7.2534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.6403   -7.3396    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.9759   -8.0933    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   28.4910   -8.7607    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.7964   -8.1795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.1319   -8.9332    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.9524   -9.0194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.2880   -9.7731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.1085   -9.8593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.4440  -10.6130    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   33.2510  -10.7845    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.3372  -11.6050    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   34.0517  -12.0175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.0517  -12.8425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.7662  -13.2550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.3372  -13.2550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.5835  -11.9406    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.4120  -12.7475    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.0315  -11.3275    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.9558   -6.1866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 15 13  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  1  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 32 31  1  6  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  1  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 36 38  2  0  0  0  0
 34 39  1  0  0  0  0
 39 40  2  0  0  0  0
 39 41  1  0  0  0  0
 32 41  1  0  0  0  0
 18 42  1  0  0  0  0
 15 42  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0168506

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCC[C@H](O)[C@H]1CC[C@H](O1)[C@H](O)CCCC[C@H](O)CCCCC[C@@H]1C[C@@H](CC(C)=O)C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C35H64O7/c1-3-4-5-6-7-8-9-10-11-15-21-31(38)33-23-24-34(42-33)32(39)22-17-16-19-29(37)18-13-12-14-20-30-26-28(25-27(2)36)35(40)41-30/h28-34,37-39H,3-26H2,1-2H3/t28-,29-,30-,31+,32-,33-,34+/m1/s1

> <INCHI_KEY>
DGQPZGGOYKKJLX-QXEFMXCDSA-N

> <FORMULA>
C35H64O7

> <MOLECULAR_WEIGHT>
596.89

> <EXACT_MASS>
596.465204401

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
106

> <JCHEM_AVERAGE_POLARIZABILITY>
74.30027390548184

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,5R)-5-[(6R,11R)-6,11-dihydroxy-11-[(2S,5R)-5-[(1S)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one

> <ALOGPS_LOGP>
6.61

> <JCHEM_LOGP>
7.496113493666664

> <ALOGPS_LOGS>
-5.87

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.501062459706915

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.898977669929621

> <JCHEM_PKA_STRONGEST_BASIC>
-1.27430907683708

> <JCHEM_POLAR_SURFACE_AREA>
113.28999999999999

> <JCHEM_REFRACTIVITY>
167.4903

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.97e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,5R)-5-[(6R,11R)-6,11-dihydroxy-11-[(2S,5R)-5-[(1S)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      27.839 -11.692   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      29.173 -10.922   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      30.507 -11.692   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      31.840 -10.922   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      33.174 -11.692   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      34.508 -10.922   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      35.841 -11.692   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      37.175 -10.922   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      38.509 -11.692   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      39.842 -10.922   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      41.176 -11.692   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      42.510 -10.922   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      43.844 -11.692   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      43.844 -13.232   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      45.177 -10.922   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      45.338  -9.390   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      46.845  -9.070   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      47.615 -10.404   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      49.146 -10.565   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      50.051  -9.319   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      49.772 -11.972   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      51.304 -12.133   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      51.930 -13.540   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      53.462 -13.701   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      54.088 -15.107   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      53.183 -16.353   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      55.620 -15.268   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      56.246 -16.675   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      57.778 -16.836   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      58.404 -18.243   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      59.936 -18.404   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      60.562 -19.811   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      62.069 -20.131   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      62.229 -21.663   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      63.563 -22.433   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      63.563 -23.973   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      64.897 -24.743   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      62.229 -24.743   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      60.823 -22.289   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      60.502 -23.795   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0      59.792 -21.145   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0      46.584 -11.548   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   42                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   42                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   41                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35   39                                                  
CONECT   35   34   36                                                       
CONECT   36   35   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36                                                            
CONECT   39   34   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   32                                                       
CONECT   42   18   15                                                       
MASTER        0    0    0    0    0    0    0    0   42    0   86    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₅H₆₄O₇

Average Mass

596.8900 Da

Monoisotopic Mass

596.46520 Da

IUPAC Name

(3S,5R)-5-[(6R,11R)-6,11-dihydroxy-11-[(2S,5R)-5-[(1S)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one

Traditional Name

(3S,5R)-5-[(6R,11R)-6,11-dihydroxy-11-[(2S,5R)-5-[(1S)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCC[C@H](O)[C@H]1CC[C@H](O1)[C@H](O)CCCC[C@H](O)CCCCC[C@@H]1C[C@@H](CC(C)=O)C(=O)O1

InChI Identifier

InChI=1S/C35H64O7/c1-3-4-5-6-7-8-9-10-11-15-21-31(38)33-23-24-34(42-33)32(39)22-17-16-19-29(37)18-13-12-14-20-30-26-28(25-27(2)36)35(40)41-30/h28-34,37-39H,3-26H2,1-2H3/t28-,29-,30-,31+,32-,33-,34+/m1/s1

InChI Key

DGQPZGGOYKKJLX-QXEFMXCDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Annonaceous acetogenins

Alternative Parents

Substituents

Annonaceae acetogenin skeleton
Long chain fatty alcohol
Gamma butyrolactone
Tetrahydrofuran
Carboxylic acid ester
Ketone
Lactone
Secondary alcohol
Monocarboxylic acid or derivatives
Ether
Dialkyl ether
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Alcohol
Organooxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.61	ALOGPS
logP	7.5	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	13.9	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	26	ChemAxon
Refractivity	167.49 m³·mol⁻¹	ChemAxon
Polarizability	74.3 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

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METLIN ID

Not Available

PubChem Compound

163026317

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one (NP0168506)

MOL for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

3D MOL for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

3D SDF for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

3D-SDF for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

PDB for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

3D PDB for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

SMILES for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

INCHI for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

Structure for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)

3D Structure for NP0168506 ((3s,5r)-5-[(6r,11r)-6,11-dihydroxy-11-[(2s,5r)-5-[(1s)-1-hydroxytridecyl]oxolan-2-yl]undecyl]-3-(2-oxopropyl)oxolan-2-one)