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Record Information
Version1.0
Created at2022-09-03 04:09:41 UTC
Updated at2022-09-03 04:09:41 UTC
NP-MRD IDNP0168370
Secondary Accession NumbersNone
Natural Product Identification
Common Name3-[(1r,2r,5s,6r,10r,13s,14s)-2-hydroxy-5,10,14-trimethyl-6-[(2s)-2-methyloxiran-2-yl]-3,8-dioxo-14-(3-oxopentyl)-15-oxatetracyclo[8.6.0.0¹,¹³.0⁴,⁹]hexadec-4(9)-en-5-yl]propanoic acid
DescriptionGanoboninone C belongs to the class of organic compounds known as carbocyclic fatty acids. These are fatty acids containing a carbocyclic ring. 3-[(1r,2r,5s,6r,10r,13s,14s)-2-hydroxy-5,10,14-trimethyl-6-[(2s)-2-methyloxiran-2-yl]-3,8-dioxo-14-(3-oxopentyl)-15-oxatetracyclo[8.6.0.0¹,¹³.0⁴,⁹]hexadec-4(9)-en-5-yl]propanoic acid is found in Ganoderma orbiforme. It was first documented in 2022 (PMID: 36057448). Based on a literature review a significant number of articles have been published on Ganoboninone C (PMID: 36057446) (PMID: 36057350) (PMID: 36057391) (PMID: 36057429) (PMID: 36057415) (PMID: 36057372).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC29H40O8
Average Mass516.6310 Da
Monoisotopic Mass516.27232 Da
IUPAC Name3-[(1R,2R,5S,6R,10R,13S,14S)-2-hydroxy-5,10,14-trimethyl-6-[(2S)-2-methyloxiran-2-yl]-3,8-dioxo-14-(3-oxopentyl)-15-oxatetracyclo[8.6.0.0^{1,13}.0^{4,9}]hexadec-4(9)-en-5-yl]propanoic acid
Traditional Name3-[(1R,2R,5S,6R,10R,13S,14S)-2-hydroxy-5,10,14-trimethyl-6-[(2S)-2-methyloxiran-2-yl]-3,8-dioxo-14-(3-oxopentyl)-15-oxatetracyclo[8.6.0.0^{1,13}.0^{4,9}]hexadec-4(9)-en-5-yl]propanoic acid
CAS Registry NumberNot Available
SMILES
CCC(=O)CC[C@]1(C)OC[C@@]23[C@@H]1CC[C@@]2(C)C1=C(C(=O)[C@@H]3O)[C@@](C)(CCC(O)=O)[C@@H](CC1=O)[C@@]1(C)CO1
InChI Identifier
InChI=1S/C29H40O8/c1-6-16(30)7-12-27(4)18-8-11-26(3)21-17(31)13-19(28(5)14-36-28)25(2,10-9-20(32)33)22(21)23(34)24(35)29(18,26)15-37-27/h18-19,24,35H,6-15H2,1-5H3,(H,32,33)/t18-,19-,24+,25+,26+,27+,28-,29+/m1/s1
InChI KeyQJWLLTKLFFIZIU-YEEGFRLSSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Ganoderma orbiformeLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as carbocyclic fatty acids. These are fatty acids containing a carbocyclic ring.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentCarbocyclic fatty acids
Alternative Parents
Substituents
  • Carbocyclic fatty acid
  • Cyclohexenone
  • Hydroxy fatty acid
  • Tetrahydrofuran
  • Secondary alcohol
  • Ketone
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Oxirane
  • Dialkyl ether
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.09ALOGPS
logP2.4ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)4.22ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area130.5 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity134.33 m³·mol⁻¹ChemAxon
Polarizability55.38 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78438197
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound122370816
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Agarwal K, Saikia P, Podder I: Metabolic syndrome and Dyslipidemia in xanthelasma palpebrarum and associated risk-factors- a case-control study. J Cosmet Dermatol. 2022 Sep 3. doi: 10.1111/jocd.15353. [PubMed:36057448 ]
  2. Park JI, Kim SJ, Kim YJ, Lee SJ: Protective role of Caesalpinia sappan extract and its main component brazilin against blue light-induced damage in human fibroblasts. J Cosmet Dermatol. 2022 Sep 3. doi: 10.1111/jocd.15354. [PubMed:36057446 ]
  3. Saravanan S, Carolin C F, Kumar PS, Chitra B, Rangasamy G: Biodegradation of textile dye Rhodamine-B by Brevundimonas diminuta and screening of their breakdown metabolites. Chemosphere. 2022 Aug 31;308(Pt 1):136266. doi: 10.1016/j.chemosphere.2022.136266. [PubMed:36057350 ]
  4. Nyman AL, Jivani S, Jazwa A, Heath E, Redmon PB, Sinha B, Hayat MJ, Eriksen MP: Student tobacco use, secondhand smoke exposure, and policy beliefs before and after implementation of a tobacco-free campus policy: Analysis of five U.S. college and university campuses. Prev Med. 2022 Oct;163:107238. doi: 10.1016/j.ypmed.2022.107238. Epub 2022 Aug 31. [PubMed:36057391 ]
  5. Zhang Y, Ni M, Zhang P, Bai Y, Zhou B, Zheng J, Cui Z: Identification and functional characterization of C-type lectins and crustins provide new insights into the immune response of Portunus trituberculatus. Fish Shellfish Immunol. 2022 Oct;129:170-181. doi: 10.1016/j.fsi.2022.08.070. Epub 2022 Aug 31. [PubMed:36057429 ]
  6. Kawamata T, Tanino Y, Nikaido T, Minemura H, Sato Y, Togawa R, Watanabe N, Yamada R, Sato R, Onuma T, Tomita H, Saito M, Rikimaru M, Suzuki Y, Tsukada Y, Nakamura K, Kanemitsu K, Iseki K, Shibata Y: Clinical effect of early administration of tocilizumab following the initiation of corticosteroid therapy for patients with COVID-19. J Infect Chemother. 2022 Dec;28(12):1639-1644. doi: 10.1016/j.jiac.2022.08.021. Epub 2022 Aug 31. [PubMed:36057415 ]
  7. Neri-Castro E, Zarzosa V, Colis-Torres A, Fry BG, Olvera-Rodriguez A, Jones J, Reyes-Velasco J, Zamudio F, Borja M, Alagon A, Lomonte B: Proteomic and toxicological characterization of the venoms of the most enigmatic group of rattlesnakes: The long-tailed rattlesnakes. Biochimie. 2022 Aug 31. pii: S0300-9084(22)00219-X. doi: 10.1016/j.biochi.2022.08.015. [PubMed:36057372 ]
  8. Bora RE, Genc Bilgicli H, Uc EM, Alagoz MA, Zengin M, Gulcin I: Synthesis, characterization, evaluation of metabolic enzyme inhibitors and in silico studies of thymol based 2-amino thiol and sulfonic acid compounds. Chem Biol Interact. 2022 Oct 1;366:110134. doi: 10.1016/j.cbi.2022.110134. Epub 2022 Aug 31. [PubMed:36057360 ]
  9. Kumar V, van Rensburg W, Snoep JL, Paradies HH, Borrageiro C, de Villiers C, Singh R, Joshi KB, Rautenbach M: Antimicrobial nano-assemblies of tryptocidine C, a tryptophan-rich cyclic decapeptide, from ethanolic solutions. Biochimie. 2022 Aug 31. pii: S0300-9084(22)00221-8. doi: 10.1016/j.biochi.2022.08.017. [PubMed:36057373 ]
  10. Gawthrop PJ, Pan M: Network thermodynamics of biological systems: A bond graph approach. Math Biosci. 2022 Oct;352:108899. doi: 10.1016/j.mbs.2022.108899. Epub 2022 Aug 31. [PubMed:36057321 ]
  11. ALJuhani WS, Aljohani AY: Complete chloroplast genome of the medicinal plant Cleome paradoxa R.Br. Ex DC: Comparative analysis, and phylogenetic relationships among the members of Cleomaceae. Gene. 2022 Dec 15;845:146851. doi: 10.1016/j.gene.2022.146851. Epub 2022 Aug 31. [PubMed:36057366 ]
  12. Pereira F, de Annunzio SR, Lopes TA, de Oliveira KT, Cilli EM, Barbugli PA, Fontana CR: Efficacy of the combination of P5 peptide and photodynamic therapy mediated by bixin and chlorin-e6 against Cutibacterium acnes biofilm. Photodiagnosis Photodyn Ther. 2022 Aug 31;40:103104. doi: 10.1016/j.pdpdt.2022.103104. [PubMed:36057364 ]
  13. Chen Y, Ma R, Pu X, Fu X, Ju X, Arif M, Yan X, Qian J, Liu Y: The characterization of a novel magnetic biochar derived from sulfate-reducing sludge and its application for aqueous Cr(Ⅵ) removal through synergistic effects of adsorption and chemical reduction. Chemosphere. 2022 Dec;308(Pt 1):136258. doi: 10.1016/j.chemosphere.2022.136258. Epub 2022 Aug 31. [PubMed:36057356 ]
  14. Kindler J, Koenig J, Lerch S, van der Venne P, Resch F, Kaess M: Increased immunological markers in female adolescents with non-suicidal self-injury. J Affect Disord. 2022 Dec 1;318:191-195. doi: 10.1016/j.jad.2022.08.125. Epub 2022 Aug 31. [PubMed:36057292 ]
  15. Geng S, Li Q, Zhou X, Zheng J, Liu H, Zeng J, Yang R, Fu H, Hao F, Feng Q, Qi B: Gut commensal E. coli outer membrane proteins activate the host food digestive system through neural-immune communication. Cell Host Microbe. 2022 Oct 12;30(10):1401-1416.e8. doi: 10.1016/j.chom.2022.08.004. Epub 2022 Sep 2. [PubMed:36057258 ]
  16. Shi Z, Rao L, Wang P, Zhang L: Influences of different carbon substrates on the morphologies of carbon/g-C(3)N(4) photocatalytic composites and the purification capacities of different composites in the weak UV underwater environment. Chemosphere. 2022 Dec;308(Pt 1):136257. doi: 10.1016/j.chemosphere.2022.136257. Epub 2022 Aug 31. [PubMed:36057358 ]
  17. Thomas P, Lai CW, Johan MR: Design of multifunctional C@Fe(3)O(4)-MoO(3) binary nanocomposite for applications in triphenylmethane textile dye amelioration via ultrasonic adsorption and electrochemical energy storage. Chemosphere. 2022 Dec;308(Pt 1):136214. doi: 10.1016/j.chemosphere.2022.136214. Epub 2022 Aug 31. [PubMed:36057345 ]
  18. Pereira GR, Lopes RP, Wang W, Guimaraes T, Teixeira RR, Astruc D: Triazole-functionalized hydrochar-stabilized Pd nanocatalyst for ullmann coupling. Chemosphere. 2022 Dec;308(Pt 1):136250. doi: 10.1016/j.chemosphere.2022.136250. Epub 2022 Aug 31. [PubMed:36057359 ]
  19. Taktak FF, Ozyaranlar E: Semi-interpenetrating network based on xanthan gum-cl-2-(N-morpholinoethyl methacrylate)/titanium oxide for the single and binary removal of cationic dyes from water. Int J Biol Macromol. 2022 Nov 30;221:238-255. doi: 10.1016/j.ijbiomac.2022.08.139. Epub 2022 Aug 31. [PubMed:36057296 ]
  20. Jia R, McClements DJ, Dai L, He X, Li Y, Ji N, Qin Y, Xiong L, Sun Q: Improvement of pasting and gelling properties of potato starch using a direct vapor-heat moisture treatment. Int J Biol Macromol. 2022 Oct 31;219:1197-1207. doi: 10.1016/j.ijbiomac.2022.08.178. Epub 2022 Aug 31. [PubMed:36057295 ]
  21. LOTUS database [Link]