NP-MRD: Showing NP-Card for 5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate (NP0168356)

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Record Information

Version

2.0

Created at

2022-09-03 04:08:34 UTC

Updated at

2022-09-03 04:08:34 UTC

NP-MRD ID

NP0168356

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate

Description

5,12,18-Trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]Pentacosa-1,4(9),5,7,11,13(25),14(19),15,17-nonaen-24-yl acetate belongs to the class of organic compounds known as tetracenequinones. These are polyaromatic hydrocarbon derivatives containing a tetracyclic cycle made up of four linearly fused benzene rings, one of which bears two ketone groups at position 1 and 4. Based on a literature review very few articles have been published on 5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]Pentacosa-1,4(9),5,7,11,13(25),14(19),15,17-nonaen-24-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032206082D          

 36 41  0  0  0  0            999 V2000
    5.3140   -3.4773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

 58 63  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652309032206082D          

 36 41  0  0  0  0            999 V2000
    5.3140   -3.4773    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0168356

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1OC2CC3=C(O)C=C(C)C=C3C3=C2C(C1OC(C)=O)=C1C(=O)C2=C(O)C=CC=C2C(=O)C1=C3O

> <INCHI_IDENTIFIER>
InChI=1S/C28H22O8/c1-10-7-15-14(17(31)8-10)9-18-21-20(15)27(34)24-22(23(21)28(11(2)35-18)36-12(3)29)26(33)19-13(25(24)32)5-4-6-16(19)30/h4-8,11,18,28,30-31,34H,9H2,1-3H3

> <INCHI_KEY>
HTMHRMTVLWOVAR-UHFFFAOYSA-N

> <FORMULA>
C28H22O8

> <MOLECULAR_WEIGHT>
486.476

> <EXACT_MASS>
486.131467668

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
50.294097998737676

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0^{2,11}.0^{4,9}.0^{14,19}.0^{21,25}]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate

> <ALOGPS_LOGP>
3.85

> <JCHEM_LOGP>
5.422681967999999

> <ALOGPS_LOGS>
-4.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.343919636626952

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.64270830875306

> <JCHEM_PKA_STRONGEST_BASIC>
-4.218431909018187

> <JCHEM_POLAR_SURFACE_AREA>
130.36

> <JCHEM_REFRACTIVITY>
129.90540000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.78e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0^{2,11}.0^{4,9}.0^{14,19}.0^{21,25}]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       9.919  -6.491   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.029  -5.423   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      12.509  -5.850   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      10.659  -3.928   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       9.180  -3.501   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.810  -2.006   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.919  -0.938   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.549   0.556   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.070   0.984   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.700   2.478   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       6.960  -0.084   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.330  -1.579   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.220  -2.647   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.741  -2.220   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.371  -0.725   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.891  -0.298   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.782  -1.366   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.521   1.197   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.631   2.265   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.261   3.760   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.111   1.838   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.481   0.343   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.590  -4.142   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       8.070  -4.569   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.440  -6.064   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      10.659   1.624   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      10.289   3.119   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      12.139   1.197   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.248   2.265   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      14.728   1.838   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      15.098   0.343   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      13.988  -0.725   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      14.358  -2.220   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      12.509  -0.298   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      11.399  -1.366   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      11.769  -2.861   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   24                                                  
CONECT    6    5    7   12                                                  
CONECT    7    6    8   35                                                  
CONECT    8    7    9   26                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   22                                                  
CONECT   12   11    6   13                                                  
CONECT   13   12   14   23                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   15   11                                                  
CONECT   23   13   24                                                       
CONECT   24   23    5   25                                                  
CONECT   25   24                                                            
CONECT   26    8   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   34                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   28   35                                                  
CONECT   35   34    7   36                                                  
CONECT   36   35                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   82    0
END

View in JSmol

Synonyms

Value	Source
5,12,18-Trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0,.0,.0,.0,]pentacosa-1,4(9),5,7,11,13(25),14(19),15,17-nonaen-24-yl acetic acid	Generator

Chemical Formula

C₂₈H₂₂O₈

Average Mass

486.4760 Da

Monoisotopic Mass

486.13147 Da

IUPAC Name

5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0^{2,11}.0^{4,9}.0^{14,19}.0^{21,25}]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate

Traditional Name

5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0^{2,11}.0^{4,9}.0^{14,19}.0^{21,25}]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate

CAS Registry Number

Not Available

SMILES

CC1OC2CC3=C(O)C=C(C)C=C3C3=C2C(C1OC(C)=O)=C1C(=O)C2=C(O)C=CC=C2C(=O)C1=C3O

InChI Identifier

InChI=1S/C28H22O8/c1-10-7-15-14(17(31)8-10)9-18-21-20(15)27(34)24-22(23(21)28(11(2)35-18)36-12(3)29)26(33)19-13(25(24)32)5-4-6-16(19)30/h4-8,11,18,28,30-31,34H,9H2,1-3H3

InChI Key

HTMHRMTVLWOVAR-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetracenequinones. These are polyaromatic hydrocarbon derivatives containing a tetracyclic cycle made up of four linearly fused benzene rings, one of which bears two ketone groups at position 1 and 4.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

Tetracenequinone
1,4-anthraquinone
9,10-anthraquinone
Phenanthrene
Naphthopyran
Anthracene
1-naphthol
2-benzopyran
Isochromane
Benzopyran
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Pyran
Vinylogous acid
Ketone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Polyol
Monocarboxylic acid or derivatives
Ether
Dialkyl ether
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.85	ALOGPS
logP	5.42	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	7.64	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	130.36 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	129.91 m³·mol⁻¹	ChemAxon
Polarizability	50.29 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162815471

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate (NP0168356)

MOL for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

3D MOL for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

3D SDF for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

3D-SDF for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

PDB for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

3D PDB for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

SMILES for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

INCHI for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

Structure for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)

3D Structure for NP0168356 (5,12,18-trihydroxy-16,23-dimethyl-3,10-dioxo-22-oxahexacyclo[11.11.1.0²,¹¹.0⁴,⁹.0¹⁴,¹⁹.0²¹,²⁵]pentacosa-1,4,6,8,11,13(25),14,16,18-nonaen-24-yl acetate)