NP-MRD: Showing NP-Card for (15z)-β-carotene (NP0168285)

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Record Information

Version

2.0

Created at

2022-09-03 04:03:28 UTC

Updated at

2022-09-03 04:03:28 UTC

NP-MRD ID

NP0168285

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(15z)-β-carotene

Description

(15Z)-beta-carotene belongs to the class of organic compounds known as carotenes. These are a type of unsaturated hydrocarbons containing eight consecutive isoprene units. They are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family. Thus, (15Z)-beta-carotene is considered to be an isoprenoid. (15z)-β-carotene is found in Psidium guajava. (15z)-β-carotene was first documented in 2015 (PMID: 25803572). Based on a literature review very few articles have been published on (15z)-beta-carotene.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032206032D          

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M  END

     RDKit          3D

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M  END


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  -13.5749   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2894   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.2894   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0039   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7184   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.4328   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.4328   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.1473   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8618   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.1473   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8618   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8618   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5762   -9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.2907   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5762   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8618  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8618  -11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.1473  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.4328  -11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.1473  -12.3750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.8618  -12.7875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5762  -12.3750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.5762  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.4007  -11.5212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.0134  -10.8504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1040   -4.3180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0434   -4.3180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 26 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
  3 35  1  0  0  0  0
 35 36  1  0  0  0  0
 35 37  1  0  0  0  0
 35 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
  2 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0168285

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C)=C/C=C\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H56/c1-31(19-13-21-33(3)25-27-37-35(5)23-15-29-39(37,7)8)17-11-12-18-32(2)20-14-22-34(4)26-28-38-36(6)24-16-30-40(38,9)10/h11-14,17-22,25-28H,15-16,23-24,29-30H2,1-10H3/b12-11-,19-13+,20-14+,27-25+,28-26+,31-17+,32-18+,33-21+,34-22+

> <INCHI_KEY>
OENHQHLEOONYIE-BPYFYYBTSA-N

> <FORMULA>
C40H56

> <MOLECULAR_WEIGHT>
536.888

> <EXACT_MASS>
536.438201803

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
96

> <JCHEM_AVERAGE_POLARIZABILITY>
70.5761487133541

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1,3,3-trimethyl-2-[(1E,3E,5E,7E,9Z,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohex-1-en-1-yl)octadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]cyclohex-1-ene

> <ALOGPS_LOGP>
9.72

> <JCHEM_LOGP>
11.124081100000001

> <ALOGPS_LOGS>
-6.14

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
191.61180000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.91e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,3,3-trimethyl-2-[(1E,3E,5E,7E,9Z,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohex-1-en-1-yl)octadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]cyclohex-1-ene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0     -18.672 -12.320   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -17.338 -11.550   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -17.338 -10.010   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -18.672  -9.240   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -20.005 -10.010   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -21.339  -9.240   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -21.339  -7.700   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -22.673 -10.010   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -24.006  -9.240   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -25.340 -10.010   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -26.674  -9.240   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -26.674  -7.700   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -28.007 -10.010   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -29.341  -9.240   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -30.675 -10.010   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -30.675 -11.550   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -32.008 -12.320   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -33.342 -11.550   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -32.008 -13.860   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -33.342 -14.630   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -33.342 -16.170   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -34.676 -16.940   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -36.009 -16.170   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -34.676 -18.480   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0     -33.342 -19.250   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -33.342 -20.790   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -32.008 -21.560   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -30.675 -20.790   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -32.008 -23.100   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0     -33.342 -23.870   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0     -34.676 -23.100   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -34.676 -21.560   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0     -36.215 -21.506   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0     -35.492 -20.254   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -16.004  -9.240   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -16.994  -8.060   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -15.014  -8.060   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0     -14.670 -10.010   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0     -14.670 -11.550   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0     -16.004 -12.320   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   40                                                  
CONECT    3    2    4   35                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   32                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   26   33   34                                             
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35    3   36   37   38                                             
CONECT   36   35                                                            
CONECT   37   35                                                            
CONECT   38   35   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39    2                                                       
MASTER        0    0    0    0    0    0    0    0   40    0   82    0
END

View in JSmol

Synonyms

Value	Source
(15Z)-b-Carotene	Generator
(15Z)-Β-carotene	Generator

Chemical Formula

C₄₀H₅₆

Average Mass

536.8880 Da

Monoisotopic Mass

536.43820 Da

IUPAC Name

1,3,3-trimethyl-2-[(1E,3E,5E,7E,9Z,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohex-1-en-1-yl)octadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]cyclohex-1-ene

Traditional Name

1,3,3-trimethyl-2-[(1E,3E,5E,7E,9Z,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohex-1-en-1-yl)octadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl]cyclohex-1-ene

CAS Registry Number

Not Available

SMILES

C\C(\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C)=C/C=C\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C

InChI Identifier

InChI=1S/C40H56/c1-31(19-13-21-33(3)25-27-37-35(5)23-15-29-39(37,7)8)17-11-12-18-32(2)20-14-22-34(4)26-28-38-36(6)24-16-30-40(38,9)10/h11-14,17-22,25-28H,15-16,23-24,29-30H2,1-10H3/b12-11-,19-13+,20-14+,27-25+,28-26+,31-17+,32-18+,33-21+,34-22+

InChI Key

OENHQHLEOONYIE-BPYFYYBTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Psidium guajava	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carotenes. These are a type of unsaturated hydrocarbons containing eight consecutive isoprene units. They are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Tetraterpenoids

Direct Parent

Carotenes

Alternative Parents

Substituents

Carotene
Branched unsaturated hydrocarbon
Cycloalkene
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	9.72	ALOGPS
logP	11.12	ChemAxon
logS	-6.1	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	191.61 m³·mol⁻¹	ChemAxon
Polarizability	70.58 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00023250

Chemspider ID

10254515

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12305639

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Heymann T, Heinz P, Glomb MA: Lycopene inhibits the isomerization of beta-carotene during quenching of singlet oxygen and free radicals. J Agric Food Chem. 2015 Apr 1;63(12):3279-87. doi: 10.1021/acs.jafc.5b00377. Epub 2015 Mar 24. [PubMed:25803572 ]
LOTUS database [Link]

Showing NP-Card for (15z)-β-carotene (NP0168285)

MOL for NP0168285 ((15z)-β-carotene)

3D MOL for NP0168285 ((15z)-β-carotene)

3D SDF for NP0168285 ((15z)-β-carotene)

3D-SDF for NP0168285 ((15z)-β-carotene)

PDB for NP0168285 ((15z)-β-carotene)

3D PDB for NP0168285 ((15z)-β-carotene)

SMILES for NP0168285 ((15z)-β-carotene)

INCHI for NP0168285 ((15z)-β-carotene)

Structure for NP0168285 ((15z)-β-carotene)

3D Structure for NP0168285 ((15z)-β-carotene)