NP-MRD: Showing NP-Card for [(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid (NP0167943)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-03 03:38:02 UTC

Updated at

2022-09-03 03:38:02 UTC

NP-MRD ID

NP0167943

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

Description

Epiplakinic acid, also known as epiplakinate, belongs to the class of organic compounds known as 1,2-dioxolanes. These are organic compounds containing 1,2-dioxolane, an aliphatic five-member ring with two oxygen atoms in ring positions 1 and 2. [(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid is found in Plakortis halichondrioides. [(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid was first documented in 2010 (PMID: 20923180). Based on a literature review a small amount of articles have been published on Epiplakinic acid (PMID: 28272898) (PMID: 24769843).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032205382D          

 27 27  0  0  1  0            999 V2000
   -9.4493   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7348   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0203   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3059   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5914   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8769   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1625   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4480   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7335   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0191   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3046   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5901   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8756   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1612   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5533   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2678   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9822   -3.1158    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3178   -3.8695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4973   -2.4484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9822   -1.7810    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2678   -1.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3178   -1.0273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1383   -0.9411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4738   -0.1874    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6232   -1.6085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7669   -2.0359    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7669   -2.8609    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  1  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 20 26  1  0  0  0  0
 26 27  1  0  0  0  0
 17 27  1  0  0  0  0
M  END

     RDKit          3D

 65 65  0  0  0  0  0  0  0  0999 V2000
   10.2685    1.2168    1.9889 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7717    2.0364    0.8396 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4293    1.6570    0.3912 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6931    0.6946    0.9177 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3534    0.3884    0.3962 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6034   -0.5682    0.9082 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2733   -0.8750    0.3934 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5111   -1.8209    0.8870 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1589   -2.1541    0.3854 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7562   -1.2672   -0.7736 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3608   -1.6852   -1.2171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1294   -0.8575   -2.3704 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2256    0.5883   -2.1014 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0334    1.1343   -1.0191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5029    0.9526   -0.9472 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9305   -0.4472   -0.7879 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4299   -0.6618   -0.6980 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5976   -2.1848   -0.5546 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0541    0.0474    0.4613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4636    0.2969   -0.0874 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.7523    1.7471   -0.2834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4382   -0.3837    0.8319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3030    0.1852    2.1940 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4912    1.0865    2.4943 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1145   -0.2936    3.2164 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3857   -0.3061   -1.3306 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1376   -0.1693   -1.7643 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3517    1.4578    2.1240 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1381    0.1493    1.7354 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7464    1.5202    2.9181 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7791    3.1300    1.0572 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4758    1.9044   -0.0229 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9984    2.2043   -0.4376 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0924    0.1326    1.7415 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9426    0.9471   -0.4320 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9823   -1.1482    1.7374 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9144   -0.2838   -0.4351 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8899   -2.4005    1.7167 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0882   -3.2049    0.0353 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4356   -2.0487    1.2191 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7134   -0.2098   -0.4685 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4228   -1.4363   -1.6431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3428   -1.6333   -0.3709 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4315   -2.7412   -1.5895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9167   -1.3650   -2.9028 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7725   -0.9529   -3.1256 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8528    0.9457   -1.9094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5022    1.1594   -3.0457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8614    2.2680   -1.0181 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6316    0.8458    0.0127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8516    1.5651   -0.0559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9998    1.4502   -1.8494 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5465   -0.7856    0.2293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5889   -1.1019   -1.5797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1588   -2.4606    0.4056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9560   -2.6217   -1.3578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6541   -2.4747   -0.6810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0896   -0.6150    1.3575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5710    0.9974    0.6691 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2695    2.0569   -1.2437 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3911    2.3769    0.5532 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8467    1.8594   -0.4205 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4798   -0.3220    0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1631   -1.4618    0.9165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3969   -1.2460    3.3077 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 17 16  1  6
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  6
 20 22  1  0
 22 23  1  0
 23 25  1  0
 23 24  2  0
 20 26  1  0
 26 27  1  0
 27 17  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  4 34  1  0
  5 35  1  0
  6 36  1  0
  7 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 10 41  1  0
 10 42  1  0
 11 43  1  0
 11 44  1  0
 12 45  1  0
 12 46  1  0
 13 47  1  0
 13 48  1  0
 14 49  1  0
 14 50  1  0
 15 51  1  0
 15 52  1  0
 16 53  1  0
 16 54  1  0
 18 55  1  0
 18 56  1  0
 18 57  1  0
 19 58  1  0
 19 59  1  0
 21 60  1  0
 21 61  1  0
 21 62  1  0
 22 63  1  0
 22 64  1  0
 25 65  1  0
M  END


  Mrv1652309032205382D          

 27 27  0  0  1  0            999 V2000
   -9.4493   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7348   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0203   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3059   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5914   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8769   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1625   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4480   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7335   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0191   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3046   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5901   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8756   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1612   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5533   -3.1158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2678   -3.5283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9822   -3.1158    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3178   -3.8695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4973   -2.4484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9822   -1.7810    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2678   -1.3685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3178   -1.0273    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1383   -0.9411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4738   -0.1874    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6232   -1.6085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7669   -2.0359    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7669   -2.8609    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  1  0  0  0
 17 18  1  6  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 20 26  1  0  0  0  0
 26 27  1  0  0  0  0
 17 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0167943

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC\C=C\C=C\C=C\CCCCCCCC[C@@]1(C)C[C@](C)(CC(O)=O)OO1

> <INCHI_IDENTIFIER>
InChI=1S/C23H38O4/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-22(2)20-23(3,27-26-22)19-21(24)25/h5-10H,4,11-20H2,1-3H3,(H,24,25)/b6-5+,8-7+,10-9+/t22-,23-/m0/s1

> <INCHI_KEY>
MIXTVNJOFJIRKQ-HYGKQVTOSA-N

> <FORMULA>
C23H38O4

> <MOLECULAR_WEIGHT>
378.553

> <EXACT_MASS>
378.277009704

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
46.81715401966302

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(3R,5S)-5-[(9E,11E,13E)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

> <ALOGPS_LOGP>
7.22

> <JCHEM_LOGP>
6.610364037999999

> <ALOGPS_LOGS>
-6.54

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.453567358068247

> <JCHEM_PKA_STRONGEST_BASIC>
-4.849708043752308

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
113.42739999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.10e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(3R,5S)-5-[(9E,11E,13E)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0     -17.639  -5.816   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -16.305  -6.586   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -14.971  -5.816   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -13.638  -6.586   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -12.304  -5.816   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -10.970  -6.586   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -9.637  -5.816   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -8.303  -6.586   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -6.969  -5.816   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.636  -6.586   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.302  -5.816   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.968  -6.586   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.635  -5.816   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.301  -6.586   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.033  -5.816   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.367  -6.586   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.700  -5.816   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.327  -7.223   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.795  -4.570   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.700  -3.324   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.367  -2.554   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.327  -1.918   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.858  -1.757   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       6.485  -0.350   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       6.763  -3.003   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       5.165  -3.800   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       5.165  -5.340   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   27                                             
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   22   26                                             
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   20   27                                                       
CONECT   27   26   17                                                       
MASTER        0    0    0    0    0    0    0    0   27    0   54    0
END

View in JSmol

Synonyms

Value	Source
Epiplakinate	Generator
Epiplakinic acid F	MeSH

Chemical Formula

C₂₃H₃₈O₄

Average Mass

378.5530 Da

Monoisotopic Mass

378.27701 Da

IUPAC Name

2-[(3R,5S)-5-[(9E,11E,13E)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

Traditional Name

[(3R,5S)-5-[(9E,11E,13E)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

CAS Registry Number

Not Available

SMILES

CC\C=C\C=C\C=C\CCCCCCCC[C@@]1(C)C[C@](C)(CC(O)=O)OO1

InChI Identifier

InChI=1S/C23H38O4/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-22(2)20-23(3,27-26-22)19-21(24)25/h5-10H,4,11-20H2,1-3H3,(H,24,25)/b6-5+,8-7+,10-9+/t22-,23-/m0/s1

InChI Key

MIXTVNJOFJIRKQ-HYGKQVTOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Plakortis halichondrioides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1,2-dioxolanes. These are organic compounds containing 1,2-dioxolane, an aliphatic five-member ring with two oxygen atoms in ring positions 1 and 2.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Dioxolanes

Sub Class

1,2-dioxolanes

Direct Parent

1,2-dioxolanes

Alternative Parents

Substituents

Ortho-dioxolane
Dialkyl peroxide
Oxacycle
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.22	ALOGPS
logP	6.61	ChemAxon
logS	-6.5	ALOGPS
pKa (Strongest Acidic)	4.45	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	113.43 m³·mol⁻¹	ChemAxon
Polarizability	46.82 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00045893

Chemspider ID

8605193

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10429765

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Jimenez-Romero C, Ortiz I, Vicente J, Vera B, Rodriguez AD, Nam S, Jove R: Bioactive Cycloperoxides Isolated from the Puerto Rican Sponge Plakortis halichondrioides. J Nat Prod. 2010 Oct 22;73(10):1694-700. doi: 10.1021/np100461t. Epub 2010 Oct 5. [PubMed:20923180 ]
Jimenez-Romero C, Rodriguez AD, Nam S: Plakortinic Acids A and B: Cytotoxic Cycloperoxides with a Bicyclo[4.2.0]octene Unit from Sponges of the Genera Plakortis and Xestospongia. Org Lett. 2017 Mar 17;19(6):1486-1489. doi: 10.1021/acs.orglett.7b00547. Epub 2017 Mar 8. [PubMed:28272898 ]
Tian XY, Han JW, Zhao Q, Wong HN: Asymmetric synthesis of 3,3,5,5-tetrasubstituted 1,2-dioxolanes: total synthesis of epiplakinic acid F. Org Biomol Chem. 2014 Jun 14;12(22):3686-700. doi: 10.1039/c4ob00448e. Epub 2014 Apr 28. [PubMed:24769843 ]
LOTUS database [Link]

Showing NP-Card for [(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid (NP0167943)

MOL for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D MOL for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D SDF for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D-SDF for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

PDB for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D PDB for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

SMILES for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

INCHI for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

Structure for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D Structure for NP0167943 ([(3r,5s)-5-[(9e,11e,13e)-hexadeca-9,11,13-trien-1-yl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)