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Record Information
Version2.0
Created at2022-09-03 03:27:15 UTC
Updated at2022-09-03 03:27:15 UTC
NP-MRD IDNP0167787
Secondary Accession NumbersNone
Natural Product Identification
Common Namekahalalide w
DescriptionN-{3-[(3S,6S,10R,14R,15aS)-1,8,14-trihydroxy-10-[(1H-indol-3-yl)methyl]-6-(4-methylpentyl)-4,11-dioxo-3H,4H,6H,7H,10H,11H,13H,14H,15H,15aH-pyrrolo[2,1-f]1-oxa-4,7,10-triazacyclotridecan-3-yl]propyl}guanidine belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. kahalalide w is found in Elysia rufescens. Based on a literature review very few articles have been published on N-{3-[(3S,6S,10R,14R,15aS)-1,8,14-trihydroxy-10-[(1H-indol-3-yl)methyl]-6-(4-methylpentyl)-4,11-dioxo-3H,4H,6H,7H,10H,11H,13H,14H,15H,15aH-pyrrolo[2,1-f]1-oxa-4,7,10-triazacyclotridecan-3-yl]propyl}guanidine.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC31H45N7O6
Average Mass611.7440 Da
Monoisotopic Mass611.34313 Da
IUPAC NameN-{3-[(3S,6S,10R,14R,15aS)-1,8,14-trihydroxy-10-[(1H-indol-3-yl)methyl]-6-(4-methylpentyl)-4,11-dioxo-3H,4H,6H,7H,10H,11H,13H,14H,15H,15aH-pyrrolo[2,1-f]1-oxa-4,7,10-triazacyclotridecan-3-yl]propyl}guanidine
Traditional Namekahalalide W
CAS Registry NumberNot Available
SMILES
CC(C)CCC[C@H]1CC(O)=N[C@H](CC2=CNC3=CC=CC=C23)C(=O)N2C[C@H](O)C[C@H]2C(O)=N[C@@H](CCCNC(N)=N)C(=O)O1
InChI Identifier
InChI=1S/C31H45N7O6/c1-18(2)7-5-8-21-15-27(40)36-25(13-19-16-35-23-10-4-3-9-22(19)23)29(42)38-17-20(39)14-26(38)28(41)37-24(30(43)44-21)11-6-12-34-31(32)33/h3-4,9-10,16,18,20-21,24-26,35,39H,5-8,11-15,17H2,1-2H3,(H,36,40)(H,37,41)(H4,32,33,34)/t20-,21+,24+,25-,26+/m1/s1
InChI KeyYWSRTGORAXAKFR-WYMBGIKYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Elysia rufescensLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassDepsipeptides
Direct ParentCyclic depsipeptides
Alternative Parents
Substituents
  • Cyclic depsipeptide
  • Macrolide lactam
  • Alpha-amino acid ester
  • Macrolactam
  • Alpha-amino acid or derivatives
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • Benzenoid
  • Substituted pyrrole
  • Heteroaromatic compound
  • Pyrrole
  • Pyrrolidine
  • Tertiary carboxylic acid amide
  • Carboxamide group
  • Carboxylic acid ester
  • Guanidine
  • Lactam
  • Lactone
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Carboximidamide
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Carbonyl group
  • Imine
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic nitrogen compound
  • Organic oxide
  • Organonitrogen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.51ALOGPS
logP0.36ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)1.98ChemAxon
pKa (Strongest Basic)11.91ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area209.71 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity173.92 m³·mol⁻¹ChemAxon
Polarizability65.2 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID27023783
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound162896338
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]