NP-MRD: Showing NP-Card for (r)-2-hydroxystearic acid (NP0166561)

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Record Information

Version

2.0

Created at

2022-09-03 01:58:02 UTC

Updated at

2022-09-03 01:58:02 UTC

NP-MRD ID

NP0166561

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(r)-2-hydroxystearic acid

Description

(R)-2-hydroxyoctadecanoic acid, also known as (R)-2-hydroxystearate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. (r)-2-hydroxystearic acid is found in Apis cerana. Based on a literature review very few articles have been published on (R)-2-hydroxyoctadecanoic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 57 56  0  0  0  0  0  0  0  0999 V2000
   -5.8468   -0.3818   -3.0891 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5079   -0.5807   -1.6024 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8779    0.6892   -0.8914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5944    0.5887    0.5748 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1152    0.3328    0.8249 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8727    0.2522    2.3038 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4295   -0.0228    2.5861 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5705    1.0741    2.0448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0808    0.8328    2.3489 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4276   -0.4376    1.7527 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8814   -0.6112    2.0806 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7244    0.5218    1.5446 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6252    0.6384    0.0490 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0773   -0.5979   -0.6680 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5098   -0.9522   -0.3826 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4788    0.1072   -0.7771 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4609    0.4571   -2.2433 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4185    1.4521   -2.4216 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7938   -0.6835   -3.1188 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0798   -1.7245   -3.1599 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9198   -0.6129   -3.9184 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5160    0.6019   -3.4495 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3106   -1.1691   -3.6861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9383   -0.5003   -3.2335 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0521   -1.4492   -1.2269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4194   -0.7749   -1.4911 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3309    1.5314   -1.3767 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9594    0.9153   -1.0476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1217   -0.3235    0.9476 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9283    1.4890    1.1157 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8057   -0.6526    0.4056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5300    1.1388    0.3382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2232    1.1795    2.8216 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4947   -0.5987    2.6903 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2330   -0.0660    3.6917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0996   -1.0018    2.1694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8171    2.0375    2.5405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6872    1.2413    0.9490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0232    0.8077    3.4612 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4260    1.7244    1.9278 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2666   -0.4666    0.6735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1183   -1.3287    2.1724 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2152   -1.5792    1.6181 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0177   -0.7472    3.1642 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7640    0.3181    1.8856 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4369    1.4954    1.9826 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5675    0.8231   -0.2109 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2058    1.4953   -0.3448 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4222   -1.4391   -0.4169 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9824   -0.3973   -1.7597 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7880   -1.9094   -0.8555 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6481   -1.1128    0.7220 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3971    1.0049   -0.1658 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5094   -0.3099   -0.5765 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4944    0.8937   -2.5640 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1364    2.0806   -3.1170 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8297   -0.3101   -3.5919 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 21  1  0
 19 20  2  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  0
  2 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
  4 30  1  0
  5 31  1  0
  5 32  1  0
  6 33  1  0
  6 34  1  0
  7 35  1  0
  7 36  1  0
  8 37  1  0
  8 38  1  0
  9 39  1  0
  9 40  1  0
 10 41  1  0
 10 42  1  0
 11 43  1  0
 11 44  1  0
 12 45  1  0
 12 46  1  0
 13 47  1  0
 13 48  1  0
 14 49  1  0
 14 50  1  0
 15 51  1  0
 15 52  1  0
 16 53  1  0
 16 54  1  0
 17 55  1  6
 18 56  1  0
 21 57  1  0
M  END


  Mrv1652309032203582D          

 21 20  0  0  1  0            999 V2000
    9.1855    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9000    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6145    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3289    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0434    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7579    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4724    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1868    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9013    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6158    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3302    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0447    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7592    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4737    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1881    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.9026    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6171    6.1283    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   20.6171    6.9533    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.3315    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0460    6.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.3315    4.8908    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0166561

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCCCC[C@@H](O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H36O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17(19)18(20)21/h17,19H,2-16H2,1H3,(H,20,21)/t17-/m1/s1

> <INCHI_KEY>
KIHBGTRZFAVZRV-QGZVFWFLSA-N

> <FORMULA>
C18H36O3

> <MOLECULAR_WEIGHT>
300.483

> <EXACT_MASS>
300.266445019

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
39.40985191801464

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-hydroxyoctadecanoic acid

> <ALOGPS_LOGP>
7.07

> <JCHEM_LOGP>
6.274654187

> <ALOGPS_LOGS>
-5.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.284148890034412

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.255557640559995

> <JCHEM_PKA_STRONGEST_BASIC>
-3.797528712514443

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
87.77779999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.43e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(R)-2-hydroxystearic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      17.146  11.439   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      18.480  10.669   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      19.814  11.439   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      21.147  10.669   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      22.481  11.439   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      23.815  10.669   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      25.148  11.439   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      26.482  10.669   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      27.816  11.439   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      29.149  10.669   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      30.483  11.439   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      31.817  10.669   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      33.150  11.439   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      34.484  10.669   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      35.818  11.439   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      37.152  10.669   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      38.485  11.439   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      38.485  12.979   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      39.819  10.669   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      41.153  11.439   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      39.819   9.129   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   40    0
END

View in JSmol

Synonyms

Value	Source
(R)-2-Hydroxystearic acid	ChEBI
(R)-2-Hydroxyoctadecanoate	Kegg
(R)-2-Hydroxystearate	Generator

Chemical Formula

C₁₈H₃₆O₃

Average Mass

300.4830 Da

Monoisotopic Mass

300.26645 Da

IUPAC Name

(2R)-2-hydroxyoctadecanoic acid

Traditional Name

(R)-2-hydroxystearic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCC[C@@H](O)C(O)=O

InChI Identifier

InChI=1S/C18H36O3/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17(19)18(20)21/h17,19H,2-16H2,1H3,(H,20,21)/t17-/m1/s1

InChI Key

KIHBGTRZFAVZRV-QGZVFWFLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Apis cerana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Hydroxy fatty acid
Alpha-hydroxy acid
Hydroxy acid
Monosaccharide
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

2-hydroxystearic acid (CHEBI:15913 )
Other Octadecanoids (LMFA02000195 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.07	ALOGPS
logP	6.27	ChemAxon
logS	-5.5	ALOGPS
pKa (Strongest Acidic)	4.26	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	87.78 m³·mol⁻¹	ChemAxon
Polarizability	39.41 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

388921

KEGG Compound ID

C03042

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

439885

PDB ID

Not Available

ChEBI ID

15913

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (r)-2-hydroxystearic acid (NP0166561)

MOL for NP0166561 ((r)-2-hydroxystearic acid)

3D MOL for NP0166561 ((r)-2-hydroxystearic acid)

3D SDF for NP0166561 ((r)-2-hydroxystearic acid)

3D-SDF for NP0166561 ((r)-2-hydroxystearic acid)

PDB for NP0166561 ((r)-2-hydroxystearic acid)

3D PDB for NP0166561 ((r)-2-hydroxystearic acid)

SMILES for NP0166561 ((r)-2-hydroxystearic acid)

INCHI for NP0166561 ((r)-2-hydroxystearic acid)

Structure for NP0166561 ((r)-2-hydroxystearic acid)

3D Structure for NP0166561 ((r)-2-hydroxystearic acid)