NP-MRD: Showing NP-Card for 3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate (NP0166543)

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Record Information

Version

2.0

Created at

2022-09-03 01:56:48 UTC

Updated at

2022-09-03 01:56:48 UTC

NP-MRD ID

NP0166543

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate

Description

3-[(3R,3aR,5aS,6R,9aR,9bR)-6,9a,9b-trimethyl-3-[(2R)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-dodecahydro-1H-cyclopenta[a]naphthalen-6-yl]propyl acetate belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units. 3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate is found in Abrotanella forsteroides. Based on a literature review very few articles have been published on 3-[(3R,3aR,5aS,6R,9aR,9bR)-6,9a,9b-trimethyl-3-[(2R)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-dodecahydro-1H-cyclopenta[a]naphthalen-6-yl]propyl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032203562D          

 34 36  0  0  1  0            999 V2000
   -3.9004    1.7873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1859    2.1998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.7570    2.1998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3280    2.1998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  8 18  1  0  0  0  0
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 32 33  1  0  0  0  0
 21 33  1  0  0  0  0
 16 33  1  0  0  0  0
 33 34  1  6  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309032203562D          

 34 36  0  0  1  0            999 V2000
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   -3.1859    2.1998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.2330    4.1130    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6701    4.8126    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3611    5.5776    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5441    5.6924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8690    6.2277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6860    6.1129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1939    6.7630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0109    6.6481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5188    7.2983    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3199    5.8832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4706    4.6131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5282    3.7901    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7633    3.4810    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5048    3.1194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  6  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 10 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
  8 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 21 20  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 22 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 21 33  1  0  0  0  0
 16 33  1  0  0  0  0
 33 34  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0166543

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CCC=C(C)C)[C@H]1CC[C@]2(C)[C@@H]1CC[C@@H]1[C@@](C)(CCCOC(C)=O)C(CC[C@@]21C)=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C32H54O2/c1-22(2)12-10-13-24(5)26-16-19-31(8)28(26)14-15-29-30(7,18-11-21-34-25(6)33)27(23(3)4)17-20-32(29,31)9/h12,24,26,28-29H,10-11,13-21H2,1-9H3/t24-,26-,28-,29-,30+,31-,32-/m1/s1

> <INCHI_KEY>
IMGGRQNZEZVCTI-GYABBCSZSA-N

> <FORMULA>
C32H54O2

> <MOLECULAR_WEIGHT>
470.782

> <EXACT_MASS>
470.412380979

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
88

> <JCHEM_AVERAGE_POLARIZABILITY>
59.84966819256405

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(3R,3aR,5aS,6R,9aR,9bR)-6,9a,9b-trimethyl-3-[(2R)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-dodecahydro-1H-cyclopenta[a]naphthalen-6-yl]propyl acetate

> <ALOGPS_LOGP>
8.33

> <JCHEM_LOGP>
8.550177829333332

> <ALOGPS_LOGS>
-6.72

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-6.993813169437716

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
146.03749999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
8.99e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[(3R,3aR,5aS,6R,9aR,9bR)-6,9a,9b-trimethyl-3-[(2R)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1H-cyclopenta[a]naphthalen-6-yl]propyl acetate

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      -7.281   3.336   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.947   4.106   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -5.947   5.646   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      -4.613   3.336   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -3.280   4.106   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.946   3.336   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.612   4.106   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.721   3.336   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.269   2.157   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.711   2.157   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.185   0.709   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.332   0.442   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.174  -0.470   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.228   2.424   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.755   3.871   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.765   5.051   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.281   5.318   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.248   4.783   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.258   5.963   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.785   7.410   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.302   7.678   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.118   8.984   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.541  10.411   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       1.016  10.626   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.489  11.625   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.014  11.411   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.962  12.624   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.487  12.410   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.435  13.623   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       8.064  10.982   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.612   8.611   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.719   7.075   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       3.291   6.498   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.676   5.823   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   18                                             
CONECT    9    8                                                            
CONECT   10    8   11   14                                                  
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   10   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18   33                                             
CONECT   17   16                                                            
CONECT   18   16    8   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   33                                                  
CONECT   22   21   23   31                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   22   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   21   16   34                                             
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   72    0
END

View in JSmol

Synonyms

Value	Source
3-[(3R,3AR,5as,6R,9ar,9BR)-6,9a,9b-trimethyl-3-[(2R)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-dodecahydro-1H-cyclopenta[a]naphthalen-6-yl]propyl acetic acid	Generator

Chemical Formula

C₃₂H₅₄O₂

Average Mass

470.7820 Da

Monoisotopic Mass

470.41238 Da

IUPAC Name

3-[(3R,3aR,5aS,6R,9aR,9bR)-6,9a,9b-trimethyl-3-[(2R)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-dodecahydro-1H-cyclopenta[a]naphthalen-6-yl]propyl acetate

Traditional Name

3-[(3R,3aR,5aS,6R,9aR,9bR)-6,9a,9b-trimethyl-3-[(2R)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1H-cyclopenta[a]naphthalen-6-yl]propyl acetate

CAS Registry Number

Not Available

SMILES

C[C@H](CCC=C(C)C)[C@H]1CC[C@]2(C)[C@@H]1CC[C@@H]1[C@@](C)(CCCOC(C)=O)C(CC[C@@]21C)=C(C)C

InChI Identifier

InChI=1S/C32H54O2/c1-22(2)12-10-13-24(5)26-16-19-31(8)28(26)14-15-29-30(7,18-11-21-34-25(6)33)27(23(3)4)17-20-32(29,31)9/h12,24,26,28-29H,10-11,13-21H2,1-9H3/t24-,26-,28-,29-,30+,31-,32-/m1/s1

InChI Key

IMGGRQNZEZVCTI-GYABBCSZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Abrotanella forsteroides	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesterterpenoids

Direct Parent

Sesterterpenoids

Alternative Parents

Substituents

Sesterterpenoid
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.33	ALOGPS
logP	8.55	ChemAxon
logS	-6.7	ALOGPS
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	146.04 m³·mol⁻¹	ChemAxon
Polarizability	59.85 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162937726

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate (NP0166543)

MOL for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

3D MOL for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

3D SDF for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

3D-SDF for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

PDB for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

3D PDB for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

SMILES for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

INCHI for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

Structure for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)

3D Structure for NP0166543 (3-[(3r,3ar,5as,6r,9ar,9br)-6,9a,9b-trimethyl-3-[(2r)-6-methylhept-5-en-2-yl]-7-(propan-2-ylidene)-octahydro-1h-cyclopenta[a]naphthalen-6-yl]propyl acetate)