NP-MRD: Showing NP-Card for (2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane (NP0166190)

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Record Information

Version

2.0

Created at

2022-09-03 01:31:16 UTC

Updated at

2022-09-03 01:31:16 UTC

NP-MRD ID

NP0166190

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane

Description

(2S)-2-[(1R)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane belongs to the class of organic compounds known as tetrahydrofurans. These are heterocyclic compounds containing a saturated, aliphatic, five-membered ring where a carbon is replaced by an oxygen. (2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane is found in Xestospongia testudinaria. Based on a literature review very few articles have been published on (2S)-2-[(1R)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 46 46  0  0  0  0  0  0  0  0999 V2000
   -3.5535    2.8441   -0.8226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6496    1.5644   -1.3628 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9655    0.6938   -0.5583 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8772    0.0894   -1.3872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6495    0.5795   -1.3900 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3849   -0.0630   -2.2319 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5491   -0.5747   -1.4122 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2184    0.5431   -0.6607 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3657    0.0427    0.1487 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4492   -0.6169   -0.6343 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5223   -1.0542    0.3724 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9885    0.1903    1.0456 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8975    0.3947    2.3405 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5191    2.0127    3.1058 Br  0  0  0  0  0  0  0  0  0  0  0  0
    5.1378   -0.9398    3.4536 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -3.8038   -0.4504   -0.0547 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9333   -0.0288    0.8227 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0300   -1.1904    1.8046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0348   -2.1707    1.2164 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0416   -1.2914    0.7547 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5077    3.2013   -0.7405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0953    3.5958   -1.4489 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0143    2.9034    0.1894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5246    1.2232    0.2925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1164   -0.7598   -1.9862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4570    1.4431   -0.7644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0320   -0.9387   -2.7688 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7506    0.6416   -3.0052 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2906   -1.0683   -2.0614 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2231   -1.3339   -0.6727 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4629    0.9528    0.0547 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5539    1.2871   -1.3905 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8127    0.9118    0.6782 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0427   -0.6609    0.9440 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0945   -1.4965   -1.2166 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9321    0.1064   -1.3329 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3239   -1.5573   -0.1834 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0094   -1.7403    1.0797 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4194    0.9449    0.4066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1993   -1.0682   -0.8888 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7743    0.9369    1.3382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8957   -0.0273    0.2524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6450   -0.8899    2.8026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0403   -1.6260    1.8365 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4572   -2.6657    0.3142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6504   -2.8896    1.9567 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  3
 13 14  1  0
 13 15  1  0
  3 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 16  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  1
  4 25  1  0
  5 26  1  0
  6 27  1  0
  6 28  1  0
  7 29  1  0
  7 30  1  0
  8 31  1  0
  8 32  1  0
  9 33  1  0
  9 34  1  0
 10 35  1  0
 10 36  1  0
 11 37  1  0
 11 38  1  0
 12 39  1  0
 16 40  1  6
 17 41  1  0
 17 42  1  0
 18 43  1  0
 18 44  1  0
 19 45  1  0
 19 46  1  0
M  END


  Mrv1652309032203312D          

 20 20  0  0  1  0            999 V2000
   -0.4090   -4.1894    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3055   -3.7769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3055   -2.9519    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0200   -2.5394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7344   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4489   -2.5394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1634   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8779   -2.5394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5923   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3068   -2.5394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0213   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7357   -2.5394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4502   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1647   -2.5394    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    7.4502   -3.7769    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -0.4090   -2.5394    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1626   -2.8749    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7147   -2.2618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3022   -1.5474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4952   -1.7189    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  4  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 16  3  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 16 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0166190

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@H](C=CCCCCCCC=C(Br)Br)[C@@H]1CCCO1

> <INCHI_IDENTIFIER>
InChI=1S/C16H26Br2O2/c1-19-14(15-11-9-13-20-15)10-7-5-3-2-4-6-8-12-16(17)18/h7,10,12,14-15H,2-6,8-9,11,13H2,1H3/t14-,15+/m1/s1

> <INCHI_KEY>
PEUQTGHGULKWLT-CABCVRRESA-N

> <FORMULA>
C16H26Br2O2

> <MOLECULAR_WEIGHT>
410.19

> <EXACT_MASS>
408.029956

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
38.25417680976021

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S)-2-[(1R)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane

> <ALOGPS_LOGP>
5.83

> <JCHEM_LOGP>
5.583216978999999

> <ALOGPS_LOGS>
-6.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-3.86559150271975

> <JCHEM_POLAR_SURFACE_AREA>
18.46

> <JCHEM_REFRACTIVITY>
103.62209999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.29e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-2-[(1R)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.763  -7.820   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.570  -7.050   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       0.570  -5.510   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.904  -4.740   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.238  -5.510   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.571  -4.740   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.905  -5.510   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.239  -4.740   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.572  -5.510   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.906  -4.740   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.240  -5.510   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.573  -4.740   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.907  -5.510   0.000  0.00  0.00           C+0
HETATM   14 Br   UNK     0      15.241  -4.740   0.000  0.00  0.00          Br+0
HETATM   15 Br   UNK     0      13.907  -7.050   0.000  0.00  0.00          Br+0
HETATM   16  C   UNK     0      -0.763  -4.740   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.170  -5.367   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.201  -4.222   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.431  -2.888   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.924  -3.209   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   16                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16    3   17   20                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   16                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₆Br₂O₂

Average Mass

410.1900 Da

Monoisotopic Mass

408.02996 Da

IUPAC Name

(2S)-2-[(1R)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane

Traditional Name

(2S)-2-[(1R)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane

CAS Registry Number

Not Available

SMILES

CO[C@H](C=CCCCCCCC=C(Br)Br)[C@@H]1CCCO1

InChI Identifier

InChI=1S/C16H26Br2O2/c1-19-14(15-11-9-13-20-15)10-7-5-3-2-4-6-8-12-16(17)18/h7,10,12,14-15H,2-6,8-9,11,13H2,1H3/t14-,15+/m1/s1

InChI Key

PEUQTGHGULKWLT-CABCVRRESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Xestospongia testudinaria	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetrahydrofurans. These are heterocyclic compounds containing a saturated, aliphatic, five-membered ring where a carbon is replaced by an oxygen.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Tetrahydrofurans

Sub Class

Not Available

Direct Parent

Tetrahydrofurans

Alternative Parents

Substituents

Tetrahydrofuran
Ketene acetal or derivatives
Oxacycle
Bromoalkene
Haloalkene
Vinyl halide
Vinyl bromide
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Organobromide
Organohalogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.83	ALOGPS
logP	5.58	ChemAxon
logS	-6.2	ALOGPS
pKa (Strongest Basic)	-3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	18.46 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	103.62 m³·mol⁻¹	ChemAxon
Polarizability	38.25 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162959173

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane (NP0166190)

MOL for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

3D MOL for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

3D SDF for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

3D-SDF for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

PDB for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

3D PDB for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

SMILES for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

INCHI for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

Structure for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)

3D Structure for NP0166190 ((2s)-2-[(1r)-11,11-dibromo-1-methoxyundeca-2,10-dien-1-yl]oxolane)