NP-MRD: Showing NP-Card for 3,8-dichloro-11h,12h-indolo[2,3-a]carbazole (NP0166060)

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Record Information

Version

2.0

Created at

2022-09-03 01:21:43 UTC

Updated at

2022-09-03 01:21:43 UTC

NP-MRD ID

NP0166060

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,8-dichloro-11h,12h-indolo[2,3-a]carbazole

Description

7,16-Dichloro-3,20-diazapentacyclo[11.7.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]Icosa-1,4(9),5,7,10,12,14(19),15,17-nonaene belongs to the class of organic compounds known as indolocarbazoles. These are polycyclic aromatic compounds containing an indole fused to a carbazole. 7,16-Dichloro-3,20-diazapentacyclo[11.7.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]Icosa-1,4(9),5,7,10,12,14(19),15,17-nonaene is a very weakly acidic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 36  0  0  0  0  0  0  0  0999 V2000
   -6.3137    2.3543    0.8712 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -4.9708    1.2795    0.4814 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2973    0.0012    0.0353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3061   -0.8859   -0.2853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9825   -0.5069   -0.1642 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8073   -1.1575   -0.4033 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7613   -0.3675   -0.1353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2852    0.8352    0.2919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4080    1.8375    0.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9609    1.6904    0.5720 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4720    0.4837    0.1434 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7551    0.0187   -0.0316 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0195    0.5804    0.1543 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1717   -0.1318   -0.1064 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7233    0.6019    0.1373 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    5.1088   -1.4318   -0.5625 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8582   -1.9835   -0.7449 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7014   -1.2779   -0.4866 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3952   -1.5658   -0.5758 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6202   -0.5362   -0.2071 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6717    0.7645    0.2797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6555    1.6730    0.6077 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3564   -0.2868   -0.0562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5158   -1.8854   -0.6345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6838   -2.1437   -0.7509 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8478    2.7706    0.9678 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6332    2.5128    0.8548 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0266    1.6026    0.5133 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0233   -2.0030   -0.7714 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8105   -3.0018   -1.1022 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0269   -2.5013   -0.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4435    2.6605    0.9527 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 20  2  0
 20 19  1  0
 19 18  1  0
 18 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
  8 21  1  0
 21 22  2  0
 22  2  1  0
 21  5  1  0
 20  7  1  0
 17 18  1  0
 12 11  1  0
  3 23  1  0
  4 24  1  0
  6 25  1  0
  9 26  1  0
 10 27  1  0
 19 31  1  0
 13 28  1  0
 16 29  1  0
 17 30  1  0
 22 32  1  0
M  END


  Mrv1533004161507292D          

 22 26  0  0  0  0            999 V2000
    1.3203   -2.9764    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    1.9877   -3.4614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9015   -4.2819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5689   -4.7668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3226   -4.4312    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0762   -4.7668    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6283   -4.1537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2158   -3.4392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6283   -2.7247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4533   -2.7247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8658   -3.4392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6727   -3.6107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3402   -3.1258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0939   -3.4614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7613   -2.9764    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    8.1801   -4.2819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5127   -4.7668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7590   -4.4312    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0053   -4.7668    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4533   -4.1537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4088   -3.6107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7414   -3.1258    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  7 20  1  0  0  0  0
 11 20  2  0  0  0  0
  8 21  1  0  0  0  0
  5 21  2  0  0  0  0
 21 22  1  0  0  0  0
  2 22  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0166060

> <DATABASE_NAME>
NP-MRD

> <SMILES>
ClC1=CC=C2NC3=C(C=CC4=C3NC3=C4C=C(Cl)C=C3)C2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H10Cl2N2/c19-9-1-5-15-13(7-9)11-3-4-12-14-8-10(20)2-6-16(14)22-18(12)17(11)21-15/h1-8,21-22H

> <INCHI_KEY>
NNZIVRYPHRMPQM-UHFFFAOYSA-N

> <FORMULA>
C18H10Cl2N2

> <MOLECULAR_WEIGHT>
325.19

> <EXACT_MASS>
324.0221037

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
34.66566134929785

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7,16-dichloro-3,20-diazapentacyclo[11.7.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]icosa-1(13),2(10),4,6,8,11,14(19),15,17-nonaene

> <ALOGPS_LOGP>
5.85

> <JCHEM_LOGP>
5.416614915333334

> <ALOGPS_LOGS>
-5.89

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.200720093166328

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.881628611504222

> <JCHEM_POLAR_SURFACE_AREA>
31.58

> <JCHEM_REFRACTIVITY>
90.49600000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.16e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7,16-dichloro-3,20-diazapentacyclo[11.7.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]icosa-1(13),2(10),4,6,8,11,14(19),15,17-nonaene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1 Cl   UNK     0       2.464  -5.556   0.000  0.00  0.00          Cl+0
HETATM    2  C   UNK     0       3.710  -6.461   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.549  -7.993   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.795  -8.898   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.202  -8.272   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       7.609  -8.898   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       8.639  -7.754   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.869  -6.420   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.639  -5.086   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.179  -5.086   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.949  -6.420   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.456  -6.740   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.702  -5.835   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      15.109  -6.461   0.000  0.00  0.00           C+0
HETATM   15 Cl   UNK     0      16.354  -5.556   0.000  0.00  0.00          Cl+0
HETATM   16  C   UNK     0      15.270  -7.993   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.024  -8.898   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.617  -8.272   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0      11.210  -8.898   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0      10.179  -7.754   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.363  -6.740   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.117  -5.835   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   22                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   21                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   20                                                  
CONECT    8    7    9   21                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   20                                                  
CONECT   12   11   13   18                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   12   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19    7   11                                                  
CONECT   21    8    5   22                                                  
CONECT   22   21    2                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₁₀Cl₂N₂

Average Mass

325.1900 Da

Monoisotopic Mass

324.02210 Da

IUPAC Name

7,16-dichloro-3,20-diazapentacyclo[11.7.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]icosa-1(13),2(10),4,6,8,11,14(19),15,17-nonaene

Traditional Name

7,16-dichloro-3,20-diazapentacyclo[11.7.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]icosa-1(13),2(10),4,6,8,11,14(19),15,17-nonaene

CAS Registry Number

Not Available

SMILES

ClC1=CC=C2NC3=C(C=CC4=C3NC3=C4C=C(Cl)C=C3)C2=C1

InChI Identifier

InChI=1S/C18H10Cl2N2/c19-9-1-5-15-13(7-9)11-3-4-12-14-8-10(20)2-6-16(14)22-18(12)17(11)21-15/h1-8,21-22H

InChI Key

NNZIVRYPHRMPQM-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolocarbazoles. These are polycyclic aromatic compounds containing an indole fused to a carbazole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Carbazoles

Direct Parent

Indolocarbazoles

Alternative Parents

Substituents

Indolocarbazole
Pyrrolo[2,3-a]carbazole
Pyrroloindole
Indole
Aryl chloride
Aryl halide
Benzenoid
Heteroaromatic compound
Pyrrole
Azacycle
Organochloride
Organohalogen compound
Hydrocarbon derivative
Organonitrogen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.85	ALOGPS
logP	5.42	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	13.88	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	31.58 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	90.5 m³·mol⁻¹	ChemAxon
Polarizability	34.67 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10087661

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,8-dichloro-11h,12h-indolo[2,3-a]carbazole (NP0166060)

MOL for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

3D MOL for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

3D SDF for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

3D-SDF for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

PDB for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

3D PDB for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

SMILES for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

INCHI for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

Structure for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)

3D Structure for NP0166060 (3,8-dichloro-11h,12h-indolo[2,3-a]carbazole)